[pdbjlvh2]Protein Model on 5zok_A_1_A

Protein Model on 5zok_A_1_A_4 (TEMPLATE: 5zok )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SMAD3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [200 aa]	Mothers against decapentaplegic homolog 1 :SMAD1_HUMAN
2	b		A 4 (A)	polymer(polypeptide(L)) [200 aa]	Mothers against decapentaplegic homolog 1 :SMAD1_HUMAN	230A(K) 241N 247T(A) 249H 361E 364Y 367T 390T 397E 399H 401N(H) 404L 405Q 407L 408D 409K 411L 412T 416S 417P (identity: 85.0 %/80.5 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5zok_A_1 identity=80.5%

queryA       228:EPAFWCSISYYELNQRVGETFHASQPSMTVDGFTDPSNSE-RFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIGGEVFAECLSDSAIFVQSPNCNQRYGW: 326
                :**  **** ***** **** ****  *  *********   *************   * ****** ** *** **** ******* ***** ***   * :
5zok_A_1      11:EPKHWCSIVYYELNNRVGEAFHASSTSVLVDGFTDPSNNKNRFCLGLLSNVNRNSTIENTRRHIGKGVHLYYVGGEVYAECLSDSSIFVQSRNCNYHHGF: 110
SecStr          :  SSSEEEEEEETTEEEEEEEE  SSEEEEESS     SSSEEE TT   TT  HHHHHHHTTTTT EEEEEETTEEEEEE SSS EEEE HHHHHHHT :    
ExpBur          :ebeebbbbbbebeeeebeeebebeeeebebbeeeeeeeeeeebbbeebebeeeeeebeebbeebeebbbbebeeebbebebebeebbbbbbebbbeeeee:    
Contact         :  b          b     b b                                                                              

queryA       327:HPATVCKIPPGCNLKIFNNQEFAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVTSTPCWIELHLNGPLQWLDKVLTQMGSP: 417
                :** ****** ** ********** ******* *** ** ** **************** ** ********* ** ****************:
5zok_A_1     111:HPTTVCKIPSGCSLKIFNNQEFAQLLAQSVNHGFETVYELTKMCTIRMSFVKGWGAEYHRQDVTSTPCWIEIHLHGPLQWLDKVLTQMGSP: 201
SecStr          : TT  EEE TT EEEEEEHHHHHHHHHHHGGG HHHHHGGGGGGEEEEEESS  SSSSS  SGGGSSSEEEEEEHHHHHHHHHHHTTS   :    
ExpBur          :eeeebbebeeeeeeebbbbeebeebbeebeeeeeeebeebeebbbbebbbeebbbeeeeeeebeebbbbbbbebebbeeebeeebeeeeee:    
Contact         :                                  b  b  b                      b      b b b  bb bbb bb   bb

Protein Model on 5zok_A_1_A_4 (TEMPLATE: 5zok )

Input Residue Numbers for Focused Sites