[pdbjlvh2]Protein Model on 5c4v_C_1_F

Protein Model on 5c4v_C_1_F_1 (TEMPLATE: 5c4v )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:3]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SMAD3_HUMAN)	C 1 (E)	polymer(polypeptide(L)) [196 aa]	Mothers against decapentaplegic homolog 4 :SMAD4_HUMAN
2	b		F 1 (F)	polymer(polypeptide(L)) [93 aa]	Ski-like protein :SKIL_HUMAN	320C(L) 330T(A) 331V 332C(H) 333K 334I 335P(Y) 337G(S) 338C(A) 340L(I) 384Y (identity: 36.4 %/49.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5c4v_C_1 identity=49.2%

queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
5c4v_C_1      29:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 128
SecStr          : SEEEEEEEEETTEE S  EEEETT  EEEEESS    BTTEEE TT   TT  HHHHHHHHTTTT EEEEEETTTEEEEE  SSS EEEE HHHHHHTT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeebeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbeeeebbbebebebeebbbbebebbbeeee:    
Contact         :                                                                                              b     

queryA       326:WHPA-TVCKIPPGCNLKIFNNQE----------------------------------FAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTVT: 390
                :  *   * ** *    * *                                                     *  * * *  *********  * **   :
5c4v_C_1     129:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXVDDLRRLCILRMSFVKGWGPDYPRQSIK: 228
SecStr          :  TTS  EEE TT EEEEE HHHHHHHHHHHHHHHHHHHHT   ---------------------------- HHHHHTTEEEEEES   STTSS  SGG:    
ExpBur          :eeeeeeebebeeeeeebbbbbebbeeebeeeeeeeeeeeeeeee----------------------------eeebeebbbbbbbbbebbbeeeeeeebe:    
Contact         :    bbbbbbb bb b                                                                             b      

queryA       391:STPCWIELHLNGPLQWLDKVL: 411
                : ****** **   ** ** **:
5c4v_C_1     229:ETPCWIEIHLHRALQLLDEVL: 249
SecStr          :GSSSEEEEEEHHHHHHHHHHH:    
ExpBur          :ebbbbbbbebeebeebbeebe:

Protein Model on 5c4v_C_1_F_1 (TEMPLATE: 5c4v )

Input Residue Numbers for Focused Sites