[pdbjlvh2]Protein Model on 1g88_C_1_B

Protein Model on 1g88_C_1_B_1 (TEMPLATE: 1g88 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SMAD3_HUMAN)	C 1 (C)	polymer(polypeptide(L)) [236 aa]	SMAD4 :SMAD4_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [242 aa]	SMAD4 :SMAD4_HUMAN	241N(D) 246E 247T 357N(A) 358Q(A) 359G 364Y(D) 367T(R) 371T(I) 390T(K) 397E 399H 401N(H) 404L 405Q 407L 408D 411L 412T(H) (identity: 52.6 %/50.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1g88_C_1 identity=50.3%

queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1g88_C_1      36:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 135
SecStr          : SEEEEEEEEETTEE S  EEEETT SEEEEESS     SSEEE SS   TT  HHHHHHHHTTTT EEEEEETTTEEEEEE SSS EEEE HHHHHHTT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeebeebebbeeeeeeeeeebbbeebebeebeeebeebbeebeebbebbbeeebebebebebeebbbbbbebbbeeee:    
Contact         :            b    bb                                                                                 

queryA       326:WHPA-TVCKIPPGCNLKIFNNQE-----------------------------------FAALLAQSVNQGFEAVYQLTRMCTIRMSFVKGWGAEYRRQTV: 389
                :  *   * ** *    * *                                        *     *   *   *  * * *  *********  *  *  :
1g88_C_1     136:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAQAAAVXXXXXXXXXXXXXAPAISLSAAAGI-GVDDLRRLCILRMSFVKGWGPDYPSQSI: 234
SecStr          :  TT  EEEE TT EEEEE HHHHHHHHHHHHHHHHHHHHHHHTT -------------  SS B   TTT-THHHHHHTTEEEEESS   STTSS  SG:    
ExpBur          :beeeebbbbbeeebebebbbbebbeeebeeebeebeeebeeebeee-------------eeeeeeeeeeee-eeeebeebbbbebbbbebbbeeeebeeb:    
Contact         :                                                                   bbb    b  b   b                  

queryA       390:TSTPCWIELHLNGPLQWLDKVLTQM: 414
                :  ****** **   ** ** **  *:
1g88_C_1     235:KETPCWIEIHLHRALQLLDEVLHTM: 259
SecStr          :GGSSSEEEEEEHHHHHHHHHHHTTS:    
ExpBur          :eebbbbbbbebebbeebbeebeeee:    
Contact         :b      b b b  bb bb  bb

Protein Model on 1g88_C_1_B_1 (TEMPLATE: 1g88 )

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