[pdbjlvh2]Protein Model on 1g88_A_1_B

Protein Model on 1g88_A_1_B_1 (TEMPLATE: 1g88 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SMAD3_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [221 aa]	SMAD4 :SMAD4_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [242 aa]	SMAD4 :SMAD4_HUMAN	246E 260F(Y) 261T(V) 262D 263P 264S 268R 272G 273L(Q) 274L 275S 277V 278N(H) 279R 284E 288R(L) 289H 291G 310D (identity: 73.7 %/48.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1g88_A_1 identity=48.9%

queryA       229:PAFWCSISYYELNQRVGETFH--ASQPSMTVDGFTDPSNSERFCLGLLSNVNRNAAVELTRRHIGRGVRLYYIG-GEVFAECLSDSAIFVQSPNCNQRYG: 325
                :*  **** * *    *****    * *  ****  ***   ***** **** *  * *  * *** ** *   * * *   **** * ****       *:
1g88_A_1      36:PEYWCSIAYFEMDVQVGETFKVPSSCPIVTVDGYVDPSGGDRFCLGQLSNVHRTEAIERARLHIGKGVQLECKGEGDVWVRCLSDHAVFVQSYYLDREAG: 135
SecStr          : SEEEEEEEEETTEE S  EEEETT SEEEEES      SSEEE SS   TT  HHHHHHHTT TT EEEEEETTTEEEEEE SSS EEEE HHHHHHTT:    
ExpBur          :beebbbbbbbbeeeebeeebebeeebeebbbbeeeeeeeeeebbbeebebeeeeeebeebbeebeebbebbbeeebbbebebebeebbbbbbebbbeeee:    
Contact         :                 b               bbbbb   b   bbbb bbb    b   bb b                   b               

queryA       326:WHPA-TVCKIPPGCNLKIFNNQEFAALLAQSVNQGFE----------------------------------AVYQLTRMCTIRMSFVKGWGAEYRRQTVT: 390
                :  *   * ** *    * *          *                                          *  * * *  *********  *  *   :
1g88_A_1     136:RAPGDAVHKIYPSAYIKVFDLRQCHRQMQQQAATAQAAAAAXXXXXXXXXXXXXXXXXXXXXXXXXXAAGIGVDDLRRLCILRMSFVKGWGPDYPSQSIK: 235
SecStr          :  TT  EEEE TT EEEEE HHHHHHHHHHHHHHHHHTT  --------------------------     HHHHGGGGEEEEEES   STTSS SSGG:    
ExpBur          :beeeebbbbbeeebebebbbbebbbeebeeebeebeeeeee--------------------------eeeeeeeebeebbbbbbbbbebbbeeeebeebe:    

queryA       391:STPCWIELHLNGPLQWLDKVLTQM: 414
                : ****** **   ** ** **  *:
1g88_A_1     236:ETPCWIEIHLHRALQLLDEVLHTM: 259
SecStr          :GSSSEEEEEEHHHHHHHHHHTTTS:    
ExpBur          :ebbbbbbbebebbeebbeebeeeb:

Protein Model on 1g88_A_1_B_1 (TEMPLATE: 1g88 )

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