[pdbjlvh2]Protein Model on 7vgs_A_1_B

Protein Model on 7vgs_A_1_B_1 (TEMPLATE: 7vgs )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(VME1_SARS)	A 1 (A)	polymer(polypeptide(L)) [196 aa]	Membrane protein :VME1_SARS2
2	b		B 1 (C)	polymer(polypeptide(L)) [218 aa]	YN7717_9 Fab light chain	137L 179K 196N(S) 197R 198Y 199R 200I 201G 202N (identity: 88.9 %/91.3 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7vgs_A_1 identity=91.3%

queryA         8:TVEELKQLLEQWNLVIGFLFLAWIMLLQFAYSNRNRFLYIIKLVFLWLLWPVTLACFVLAAVYRINWVTGGIAIAMACIVGLMWLSYFVASFRLFARTRS: 107
                :****** ************** ** ****** *********** *********************** ********** ********* ***********:
7vgs_A_1      33:TVEELKKLLEQWNLVIGFLFLTWICLLQFAYANRNRFLYIIKLIFLWLLWPVTLACFVLAAVYRINWITGGIAIAMACLVGLMWLSYFIASFRLFARTRS: 132
SecStr          : HHHHHHHHHHHHHHHHHHHHHHHHHHHS SSS  SSHHHHHHHHHHHHHHHHHHHHHHTTSSS SSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHH   :    
ExpBur          :eeeeeeeeeeeeeeebeebeeeeeebeeebeeeebeeebeebbebeeeeeebeeeeeeeebeeeeeeeebeebeeebeebeeeeeebbeebeebeeebeb:    

queryA       108:MWSFNPETNILLNVPLRGTIVTRPLMESELVIGAVIIRGHLRMAGHSLGRCDIKDLPKEITVATSRTLSYYKLGASQRVGTDSGFAAYNRYRIGNY: 203
                :**************** *** **** ********** ***** *** ********************************  ******* *******:
7vgs_A_1     133:MWSFNPETNILLNVPLHGTILTRPLLESELVIGAVILRGHLRIAGHHLGRCDIKDLPKEITVATSRTLSYYKLGASQRVAGDSGFAAYSRYRIGNY: 228
SecStr          :S    SS S EEEE  SSS EEEE S   SEEEEE TTT EEETTEEEE   SS  SEEEEE SSS EEEEE     B STT B  EEEEEEE   :    
ExpBur          :eebebbeeebbbbbebeeeeebbbbeeeeeebebebeebebebeebebeebebebbeebebbbbeeebbebeeeeeeeeeeebbebebeeeeeeee:    
Contact         :                             b                                         b                bbbbbbb

Protein Model on 7vgs_A_1_B_1 (TEMPLATE: 7vgs )

Input Residue Numbers for Focused Sites