[pdbjlvh2]Protein Model on 7avd_B_1_D

Protein Model on 7avd_B_1_D_1 (TEMPLATE: 7avd )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(R1A_SARS)	B 1 (B)	polymer(polypeptide(L)) [306 aa]	3C-like proteinase :R1AB_SARS2
2	b		D 1 (B)	non-polymer(S1W)	3-[[5-[3-(dimethylamino)phenoxy]pyrimidin-2-yl]amino]phenol	3281H 3284C 3286A(S) 3289M 3294Y 3404H 3427D 3428R 3429Q (identity: 88.9 %/96.1 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7avd_B_1 identity=96.1%

queryA      3241:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDTVYCPRHVICTAEDMLNPNYEDLLIRKSNHSFLVQAGNVQLRVIGHSMQNCLLRLKVDTSNPKTPK:3340
                :********************************** ********** ****************** ******************** * ***** ******:
7avd_B_1       1:SGFRKMAFPSGKVEGCMVQVTCGTTTLNGLWLDDVVYCPRHVICTSEDMLNPNYEDLLIRKSNHNFLVQAGNVQLRVIGHSMQNCVLKLKVDTANPKTPK: 100
SecStr          :          HHHHTTEEEEEETTEEEEEEEETTEEEEEGGGG  TTTTTS  HHHHHHT  GGGEEEEETTEEE EEEEEEETTEEEEEESS  TT  S:    
ExpBur          :eebeeebbebeebeebbbebbbeeeebbbbbbeeebbbbbbbbbeeeeeeebebeebbeeeeeeebebebeeeebebebeeeeebbbebebeeebeeebe:    
Contact         :                                        b  b b  b    b                                              

queryA      3341:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNHTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGKFYGPFVDRQTAQAAGTDTTI:3440
                :********************************* ********************************************* ********************:
7avd_B_1     101:YKFVRIQPGQTFSVLACYNGSPSGVYQCAMRPNFTIKGSFLNGSCGSVGFNIDYDCVSFCYMHHMELPTGVHAGTDLEGNFYGPFVDRQTAQAAGTDTTI: 200
SecStr          :EEE    TT EEEEEEEETTEEEEEEEEE  TTS B     TT TT EEEEEETTEEEEEEEEEEE TTS EEEE TTS BSTT  SSSS        B :    
ExpBur          :eeeeebeebebbbbbbbbebeeeeeebbbbbbbebbeeebeeebbbbbbbbbeeebbbbbbbbbbebeeeebbbbbbebebbeebebeeeebeeeebeeb:    
Contact         :                                                               b                      bbb           

queryA      3441:TLNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCAALKELLQNGMNGRTILGSTILEDEFTPFDVVRQC:3540
                :* **************************************************************** *****************  **************:
7avd_B_1     201:TVNVLAWLYAAVINGDRWFLNRFTTTLNDFNLVAMKYNYEPLTQDHVDILGPLSAQTGIAVLDMCASLKELLQNGMNGRTILGSALLEDEFTPFDVVRQC: 300
SecStr          :HHHHHHHHHHHHHTT  TT  S    HHHHHHHHHHTTB    HHHHHHTHHHHHHHT  HHHHHHHHHHHHHH  TT  BTTBSS      HHHHHHH :    
ExpBur          :bbbbbbbbbbbbeeeeeebeeeeebeeeebeebbeeeebeebeeeebeebeebbeebebebeebbbbbbbbbeeebeeeebeebeebebbbbbebbbebb:    

queryA      3541:SGVTFQ:3546
                :******:
7avd_B_1     301:SGVTFQ: 306
SecStr          :TTS   :    
ExpBur          :eebeee:

Protein Model on 7avd_B_1_D_1 (TEMPLATE: 7avd )

Input Residue Numbers for Focused Sites