#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8urb_A_1_F_1

Protein Model on 8urb_A_1_F_1 (TEMPLATE: 8urb )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [921 aa] nsp12 :U6BRU0_9ALPC
2 b F 1 (J) polymer(polyribonucleotide) RNA (55-MER) 500K 501S 507N 545K 558A(G) 559G 569R 577K 580A(V) 589I 592S(T) 594F 595Y 682S 683G 684D 685A 689Y 860V 914R(K) 915Y(F) (identity: 76.2 %/60.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8urb_A_1 identity=60.7%
queryA         6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105
                :  **** * ***** **  ** *  *********  **   **** ** *    *  *       **** * *   **  **  *  * *** ****   :
8urb_A_1       5:AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD----AFYVVKRCTKSAMEHEQSIYSRLEKCGAVAEHDFFTWK:  99
SecStr          :HHHHHHT SS   EEES-STTS   EEEE  EE SS EE SEEEE SEEEEEESSSSS---- EEEEEEE HHHHHHHHHHHHHHTTSSSB  EEEEEEE:    
ExpBur          :ebeeebebeeeeebeee-eeeebeeeebbbbeeeeebbbbbebeeeebbbbbbeeeeb----bbbbbbeeeeeebeebeebbeebeeeebbbebebbeee:    

queryA       106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205
                :          *  ** *** ** **** *** *** ** **     *   *** * * * *** ** **** **  *  * ** * *****   ***** :
8urb_A_1     100:DGRAIYGNVCRKDLTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVSRAMLKCVKFCDAMVEQGIVGVV: 199
SecStr          : SS EEEEEEEEEE SSBHHHHHHHHHS  SSS HHHHHHHHHHTSS GGGGGSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTEEEE :    
ExpBur          :eeeeebbbbbbbebbebbbbbbbbbbbebbeeebeebeebbebeebbeeebbeeeebbbbbebeebbebbeebbebbbebbeebbebbebbeebbbebeb:    

queryA       206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304
                :*********  ******     * * *   ****  **    *  *  *  *  *         *** *****    **  *****   ****** * * :
8urb_A_1     200:TLDNQDLNGDFYDFGDFTCSIKGMGIPICTSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE: 299
SecStr          : GGGBBSSS B    S EE SSS  EEE HHHHHHTHHHHHHTTTTGGG S  S TTSTT  SGGGG    HHHHHHHHHHH TT  S   SSGGG  SH:    
ExpBur          :bbbbbbbebebbebeebeeeeebebebebebbbbbbbbbbbbbebbeeeeeeeeeeeeeebeeeeeeeeebeebbeebbeebbeebeeebebbbeebeee:    

queryA       305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404
                : ** ****** ****  * * **** **   **** *   ****  ** * * * ********  ***    ***   **   * * ** *******   :
8urb_A_1     300:QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNLHSSRLSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTG: 399
SecStr          :HHHHHHHHHHHHHGGGS TTS B  EEEEEETTEEEEEE EEEETTTEEEE S   SEE S  HHHHHHHHH HHHHHHTS     TT SS      TT :    
ExpBur          :ebbbbbbbbbbbbbebbbeebbbebeeebebeeeebebbbbbbbbbbbbbebeeeeeeeeeeeebeebbbebbbbeeeeebeebebeebebbbebbeeee:    

queryA       405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504
                :   ****** *** ****    *** ***   ******** * **  * ****** **  ** *   *   *  *** * **** *  * * ** **** :
8urb_A_1     400:MTNQTVKPGHFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKGDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGY: 499
SecStr          :   B B   EE HHHHHHHHHHTTT TT SS    B   B TBHHHHHHGGGGG       HHHHHHHHHHHHHTTSSS      GGG   S SSS   T:    
ExpBur          :eeeeebeeeeebeebeebbeeeebbeeeeebeeebebeeeeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebeebebebeebeeeeeeeebbb:    
Contact         :                                                                                               bb   

queryA       505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604
                :* ** *** *** * *** ** * ******  ** ** ******* * ***** ***  **** ** *** ****  **** ***** ****** **** :
8urb_A_1     500:PLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN: 599
SecStr          :TGGGT  HHHHHHHS HHHHHHHHHHHTTS    EEEEEE  S BSSSS  EEEE  HHHHHHHHHHHHHHHHHHHH  SSSB TT  STTTHHHHHHHH:    
ExpBur          :bbeeeeebbebbeebeeeebeebbebbeebbbbbbbebebeeebbeeeebebebbbbbbbbbbbebbbbebbebbeeeeebbbbebeebeebbbbebbee:    
Contact         :  b                                     b            bb         b       b  b        b  b bb         

queryA       605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704
                :    **** ************ *** *      *  *******   ** ** ** **** * *   *  * ***** *************** *** ***:
8urb_A_1     600:LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANV: 699
SecStr          :HHTT SSEEEEE   TTHHHH  HHHHHHHHHHHTTT SSSS HHHHHHHHHHHHHHTTS EEEETTEEEE  SS  TTSTTHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeebeeebbbbbebbebebbbbbbbbbbbbbbbbebbeeebeeeeebbbbbbbbbbbbbbbbbbbbbbbbbbbbbbeebebbebbbbbbbbbbbbbbbb:    
Contact         :                                                                             bbbb   b               

queryA       705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804
                :* *** * *      *  **  **** **   **  ** * * ************** *** *  *** * **    ** ***********  *** * *:
8urb_A_1     700:NKLLSVDSNVCHNLEVKQLQRKLYECCYRSTTVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPD: 799
SecStr          :HHHTTS TTT   HHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHT     GGG  EES :    
ExpBur          :bebbbbebeebeeeebeebbeebbebbbeeeebeeebbeebbbbbeebbbbbbebeebbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbebee:    

queryA       805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904
                :  ************     *   *********** ** **** ****     ** ********** ** * **  **   *     *   *    *   *:
8urb_A_1     800:INKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLNAGVLESFS: 899
SecStr          :GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSGGG GGGTTTTSTTTGGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eeebbeebeebebbeeeeeeeebbbbbbebbebbbbbbbbeeeeeeebeeebeebbebbbebbbbbebeeebbeebbebbbebbeebbeeebeeeeeeee:    
Contact         :                                                       b                                            

queryA       905:VMLTNDNTSRYWEPEFYEAMY: 925
                :* *  * *   *   **  **:
8urb_A_1     900:VTLLEDSTAKFWDESFYANMY: 920
SecStr          :    SSTTTTTTSHHHHHGGG:    
ExpBur          :eeeeeeebeebbeeebbbebb:    
Contact         :         bb

Input Residue Numbers for Focused Sites

ex) 2,15,123