#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8gwn_A_1_F_1

Protein Model on 8gwn_A_1_F_1 (TEMPLATE: 8gwn )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [926 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b F 1 (J) polymer(polyribonucleotide) template 496N 500K 501S 543N 558A 559G 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 686T 687T 689Y 857E 914R 915Y 924M (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8gwn_A_1 identity=100.0%
queryA         4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
                :****************************************************************************************************:
8gwn_A_1       4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
SecStr          :  HHHHHHS SS   B  SS SSS     EE    SSS     EE         B  GGG   S      B  SHHHHHHHHHHHHHTT SSS      B:    
ExpBur          :eeebbeebbeeeeebbeeebeeeeeeeeebbbbeeeeebbbbbebeeeebbbbbbbeeeeeeeebbbbbbbeeeeebeebeebbeebeebebbbebebbe:    

queryA       104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
                :****************************************************************************************************:
8gwn_A_1     104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
SecStr          :  SSSS  BB    S  SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGTSS SS SSS TTHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTEEE:    
ExpBur          :eeeeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbeebeebeebbeebbeebbebbbebbebbeebeeebbeb:    

queryA       204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
                :****************************************************************************************************:
8gwn_A_1     204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
SecStr          :E  TTSSBSSS      S EE  TT  EEE SHHHHHHTTHHHHS TTGGGSBTTS TTS B    TT    SSHHHHHHHHS    SS   SSGGG SS:    
ExpBur          :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbebeeeeeeeeeeeeeeeeeebeebbeebbeebbebbeeebbbebeebee:    

queryA       304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
                :****************************************************************************************************:
8gwn_A_1     304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
SecStr          :SHHHHHHHHHHHHTTTSS SSS EE   EEEETTEEEE   EEE SSS EEE S   S  S   SHHHHHHHS HHHHHHSS     SS SS      SS:    
ExpBur          :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeeeeebeebbebbeebbbbeeeeeeeeeebeebebebebbeee:    

queryA       404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
                :****************************************************************************************************:
8gwn_A_1     404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
SecStr          :S     B   EE HHHHHHHHHTT   TT S     B   B STTHHHHHGGGGG       STTHHHHHHHHHHHTTS       TTT   S S S   :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebebebbbebebbeebbbbbbbbbbbbbbbbbbbeebeebebebeebeeeeeeeebb:    
Contact         :                                                                                            b   bb  

queryA       504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
                :****************************************************************************************************:
8gwn_A_1     504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
SecStr          :GGGTTT  HHHHHHSS HHHHHHHHTTTTSS     B  EE    BS  S  EE  B HHHHHHHHHHHHHHHHHHTT  SSSB TT  STTTTHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebeeeeebbeeeebbbebebbbbbbbbbebbbbebbebbeeeeeebbbbeeebeeebbeebbe:    
Contact         :                                       b              bb         b       b  b         b b bb        

queryA       604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
                :****************************************************************************************************:
8gwn_A_1     604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
SecStr          :HHTSS SS        SSTTTS  HHHHHHHHHHHT S SSSS SHHHHHHHHHHHHHHSS     SSS     SS  TTSSSHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebeebbbbbbbbbbbbbbbbbbeebeeebeeeeebbbbbbbbbbbbebbbbbebbbbbbebbbbeebbbeebbbbbbbbbbbbbbb:    
Contact         :                                                                              bbbbbb b              

queryA       704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
                :****************************************************************************************************:
8gwn_A_1     704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
SecStr          :HHHHHSS TTT   SSHHHHHHHHHHHHTS SS  HHHHHHHHHHHHHS   EESSS EE    STTTTSSSS  SHHHHHHHHHHH     TTS    S:    
ExpBur          :bbbbbebebeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe:    

queryA       804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
                :****************************************************************************************************:
8gwn_A_1     804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
SecStr          : SSS  S SSS   B  EETTEE  B    HHHHHHHHHEESSTTTS SGGGHHHHHHHHHHT TTTT SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eeeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeeeeee:    
Contact         :                                                     b                                              

queryA       904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :**************************:
8gwn_A_1     904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :S    S   TTTTSHHHHTGGGSS  :    
ExpBur          :eeeeeeeebeeebeeeebeebbeeee:    
Contact         :          bb        b                                                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123