#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8gwk_A_1_B_1

Protein Model on 8gwk_A_1_B_1 (TEMPLATE: 8gwk )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [931 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b B 1 (B) polymer(polypeptide(L)) [187 aa] Non-structural protein 8 :R1AB_SARS2 270L 271L 273Y 324T 326F 328P 329L 330V 331R 332K 338V 339P 340F 344T 365R 368F 371L 379A 380M 381H 383A 384S 386N 387L 388L 389L 391K 392R 398V 402T 403N 407F 447N 509W 514L 518S 523D 666M (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8gwk_A_1 identity=100.0%
queryA         1:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 100
                :****************************************************************************************************:
8gwk_A_1       1:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 100
SecStr          :  SSHHHHHHHHTTS   EEESSSSSS   EEEEEEEESSS EEEEEEEE S EEEEEE GGG EEEEEEEE    SHHHHHHHHHHHHHTT TTB  EE:    
ExpBur          :eeeeeebbeebbeeeeeebeeeeeeeeeeeeebbebeeeeebbbbbebeeeebbbbbbbeeeeeeeebbbbbbeeeeeebeebeebbeebeebebbbebe:    

queryA       101:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 200
                :****************************************************************************************************:
8gwk_A_1     101:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 200
SecStr          :EEEEESSSSEEEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGGSSSTT SSS TTHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT:    
ExpBur          :bbebeeeeeeebbbbbbebbebbbbbbbbbbbebeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbeebeeeb:    

queryA       201:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 300
                :****************************************************************************************************:
8gwk_A_1     201:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 300
SecStr          :EEEE  GGGBBTTS B   TT EE  TT  EEE HHHHHHHTTHHHHTTGGGGGGBTTS TTS B    TT    HHHHHHHHHHH TT  S   SSGGG:    
ExpBur          :bebebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbee:    
Contact         :                                                                     bb b                           

queryA       301:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 400
                :****************************************************************************************************:
8gwk_A_1     301:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 400
SecStr          : SSHHHHHHHHHHHHHHTTSS TTS EEEEE  EETTEE  EEEEEEETTTEEEE S   SSBS   HHHHHHHHH SHHHHTTSEE    S SS EEEE:    
ExpBur          :beebebbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeeeeebbeebbbbeeeeeeeeeebeebebebebb:    
Contact         :                       b b bbbbb     bbb   b                    b  b  b       bbb bb bbbb bb     b  

queryA       401:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 500
                :****************************************************************************************************:
8gwk_A_1     401:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 500
SecStr          :SSSS   B B   EE HHHHHHHHTTT S TT S     B   B TBHHHHHHGGGGG       HHHHHHHHHHHHHTT S       TTS   S S S:    
ExpBur          :eeeeeeeeebeeeeebeebeebbeeeebeeeebebeeebebeeeeeebebebbbebebbeebbbbbbbbbbbbbbbbebbeebeebebebeebeeeeeee:    
Contact         : bb   b                                       b                                                     

queryA       501:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 600
                :****************************************************************************************************:
8gwk_A_1     501:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 600
SecStr          :   SSGGGT  HHHHHHHS HHHHHHHHHHTTTS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHTT  SSSB TT  STTTHHHH:    
ExpBur          :ebbbbbeeeeebeebbeebeeeebeebbeebbebbbbbbbebebeeebeeeeebebebbbbbbbbbbbebbbbebbebbeeeeeebbbbeeeeebbbbee:    
Contact         :        b    b   b    b                                                                             

queryA       601:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 700
                :****************************************************************************************************:
8gwk_A_1     601:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 700
SecStr          :HHHHHHTT SSEEEEE   TTHHHH  HHHHHHHHHHHHTT TTTS HHHHHHHHHHHHHHHTS EEEETTEEEE  SS  TTSTTHHHHHHHHHHHHHH:    
ExpBur          :bbeebbeebeeeebbbbebeebebbbbbbbbbbbbbbbbbebeeebeeeeebbbbbbbbbbbbebbbbbebbbbebebbbbeebebbebbbbbbbbbbbb:    
Contact         :                                                                 b                                  

queryA       701:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 800
                :****************************************************************************************************:
8gwk_A_1     701:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 800
SecStr          :HHHHHHHHTS TTS   HHHHHHHHHHHHHHTT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS  HHHHHHHHHHHHS    TTS E:    
ExpBur          :bbbbbbbbebbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbbebbeeebbbebebbbbbbbbbbbbbbeeeebb:    

queryA       801:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML: 900
                :****************************************************************************************************:
8gwk_A_1     801:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML: 900
SecStr          :EES TTS  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSGGGT HHHHHHHHHTGGGGG SSHHHHHHHHHHHHHHHHHHHHHHTTTT:    
ExpBur          :eeeeeeebbeebeebebbebebeeeebbbbbbebbebbbbbbebeeeeeeebbeebeebbebbbebbbbeeeeeeebbebbebbbebbeebbeeeeeeee:    

queryA       901:DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVL: 931
                :*******************************:
8gwk_A_1     901:DMYSVMLTNDNTSRYWEPEFYEAMYTPHTVL: 931
SecStr          :TTS       SGGGGGSSHHHHGGGSSS   :    
ExpBur          :eeeeeeeeeeeeeeebeeeebeebbeeeeee:    


Input Residue Numbers for Focused Sites

ex) 2,15,123