#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 8g6r_A_1_F_1

Protein Model on 8g6r_A_1_F_1 (TEMPLATE: 8g6r )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [899 aa] nsp12 :A0A0U2C263_9ALPC
2 b F 1 (A) non-polymer(ZN) ZINC ION 295H 301C 306C 310C (identity: 100.0 %/59.5 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8g6r_A_1 identity=59.5%
queryA         6:SFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFR: 105
                :  **** * ***** **  ** *  *********  **   **** ** *    *  *       **** * *   **  **  *  * *** ****   :
8g6r_A_1       3:AYLNRVRGSSAARLEPC-NGTDTQHVYRAFDIYNKDVACLGKFLKVNCVRLKNLDKHD----AFYVVKRCTKSAMEHEQSIYSRLEKCGAVAEHDFFTWK:  97
SecStr          :HHHHHHHHHHTT EEES-STTS   EEEE  EE SS EE SEEEE SEEEEEESSSSS---- EEEEE   GGGHHHHHHHHHHHHTSTTB  EEEEEEE:    
ExpBur          :ebbeebeeebeeebeee-eebebeeeebbbbeeeeebbbbbebeeeebbbbebeeeeb----bbbbbbeeeeeebeebeebbeebeebebbbebbbbeee:    

queryA       106:IDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVL: 205
                :          *  ** *** ** **** *** *** ** **     *   *** * * * *** ** **** **  *  * ** * *****   ***** :
8g6r_A_1      98:DGRAIYGNVCRKDLTEYTMMDLCYALRNFDENNCDVLKSILIKVGACEESYFNNKVWFDPVENEDIHRVYALLGTIVSRAMLKCVKFCDAMVEQGIVGVV: 197
SecStr          :ETTEEEEEEEEEEE SSBHHHHHHHHSS  SSS HHHHHHHHHHTSS GGGGGSTTTT TTT THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT BEE :    
ExpBur          :eeeeebbbbbbbebbbbbbbbbbbbbbebebeebeebebbbeeeebbeeebbeeeebbbbbebeebbebbeebbebbbebbeebbebbebbeeebbebeb:    

queryA       206:TLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDL-TKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDD: 304
                :*********  ******     * * *   ****  **    *  *  *  *  *         *** *****    **  *****   ****** * * :
8g6r_A_1     198:TLDNQDLNGDFYDFGDFTCSIKGMGIPICTSYYSYMMPVMGMTNCLASECFVKSDIFGEDFKSYDLLEYDFTEHKTALFNKYFKYWGLQYHPNCVDCSDE: 297
SecStr          : GGGBBTTS B   TT B  STT   EE HHHHHHHHHHHHHTTTTGGG S  S SSSSS  TGGGG    HHHHHHHHHHH TT  S   SSGGG  SH:    
ExpBur          :bbbbbbbebbbbebeebeeeeeeebebebebbbbbbbbbbbbbebbeeeeeeeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeee:    
Contact         :                                                                                          b     b   

queryA       305:RCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNN: 404
                : ** ****** ****  * * **** **   **** *   ****  ** * * * *      *  ***    ***   **   * * ** *******   :
8g6r_A_1     298:QCIVHCANFNTLFSTTIPITAFGPLCRKCWIDGVPLVTTAGYHFKQLGIVWNNDLNXXXXXXSINELLQFCSDPALLIASSPALVDQRTVCFSVAALGTG: 397
SecStr          :HHHHHHHHHHHHHHTTS TTT EEEEEEEEETTEEEEEEEEEEETTTEEEE SS  ------ HHHHHHHHHSHHHHHHTS B   SS SS EEEE TT :    
ExpBur          :bebbbbbbbbbbbbebbeeebbbebeeeeebeeeebebbbbbbbbbbbbbebeeee------eebeebbbebbbbeebeebeebebeebebebebbbeee:    
Contact         : b   b                                                                                              

queryA       405:VAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGF: 504
                :   ****** *** ****    *** ***   ******** * **  * ****** **  ** *   *   *  *** * **** *  * * ** **** :
8g6r_A_1     398:MTNQTVKPGHFNKEFYDFLLEQGFFSEGSELTLKHFFFAQKGDAAVKDFDYYRYNRPTVLDICQARVVYQIVQRYFDIYEGGCITAKEVVVTNLNKSAGY: 497
SecStr          :         EE HHHHHHHHHHTTT S SS     B     TTHHHHHHGGGGG       HHHHHHHHHHHHHTTSSS      GGG     S S   H:    
ExpBur          :eeeeebeeeeebeebeebbeeeebbeeeeebebebebeebeeebbbebbbebebbbebbbbbbbbbbbbbbbbebbeebebbebebeebeeeeeeeebbb:    

queryA       505:PFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKT: 604
                :* ** *** *** * *** ** * ******  ** ** ******* * ***** ***  **** ** *** ****  **** ***** ****** **** :
8g6r_A_1     498:PLNKFGKAGLYYESLSYEEQDELYAYTKRNILPTMTQLNLKYAISGKERARTVGGVSLLSTMTTRQYHQKHLKSIVNTRGASVVIGTTKFYGGWDNMLKN: 597
SecStr          :HHHTT  HHHHHHHS HHHHHHHHHHHTTS     B  EE    BSSS   EE  B HHHHHHHHHHHHHHHHHHHH  SSSB TT  STTTHHHHHHHH:    
ExpBur          :bbeeeeebbebbeebeeeebeebbebbeebbbbbbbebebeeebeeeeebebebebbbbbbbbbbbbbbebbeebeeeeebbbbeeeebeebbbbebbee:    

queryA       605:VYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANV: 704
                :    **** ************ *** *      *  *******   ** ** ** **** * *   *  * ***** *************** *** ***:
8g6r_A_1     598:LIDGVENPCLMGWDYPKCDRALPNMIRMISAMILGSKHTTCCSSTDRFFRLCNELAQVLTEVVYSNGGFYLKPGGTTSGDATTAYANSVFNIFQAVSANV: 697
SecStr          :HHSS SSEEEEE   TTHHHHS TTHHHHHHHHHHTT TTTS HHHHHHHHHHHHHHHTS EE  TTEEEE  SS  TTSTTHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbeebeeebbbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeebbbbbbbbbbbbbbbbbbbbbbbbbbbebbbbeebebbebbbbbbbbbbbbbbbb:    

queryA       705:NALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETD: 804
                :* *** * *      *  **  **** **   **  ** * * ************** *** *  *** * **    ** ***********  *** * *:
8g6r_A_1     698:NKLLSVDSNVCHNLEVKQLQRKLYECCYRSTTVDDQFVVEYYGYLRKHFSMMILSDDGVVCYNNDYASLGYVADLNAFKAVLYYQNNVFMSASKCWIEPD: 797
SecStr          :HHHHTS GGG   HHHHHHHHHHHHHHTS SS  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHTTSS  HHHHHHHHHHTT S   TTT EEES :    
ExpBur          :bebbebebeebeeeebeebbbebbebbbeeeebeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbebebbbbbbbbbbbbbbeeeebbebee:    

queryA       805:LTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYS: 904
                :  ************     *   *********** ** **** ****     ** ********** ** * **  **   *     *   *         :
8g6r_A_1     798:INKGPHEFCSQHTMQIVDKDGTYYLPYPDPSRILSAGVFVDDVVKTDAVVLLERYVSLAIDAYPLSKHENPEYKKVFYVLLDWVKHLYKTLXXXXXXXXX: 897
SecStr          :GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESS   S THHHHHHHHHHHHHHGGGGG SSHHHHHHHHHHHHHHHHHHHH ---------:    
ExpBur          :eeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebbbebbbbbebebeeeeebbebbbebbeebeeee---------:    

queryA       905:VMLTNDNTSRYWEPEFYEAMY: 925
                :       *   *   **  **:
8g6r_A_1     898:XXXXXXXTAKFWDESFYANMY: 918
SecStr          :------- HHHH HHHHHHHT:    
ExpBur          :-------eeeeeeeeebeebb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123