#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7uo4_A_1_F_1

Protein Model on 7uo4_A_1_F_1 (TEMPLATE: 7uo4 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [927 aa] RNA-directed RNA polymerase :R1AB_SARS2
2 b F 1 (T) polymer(polyribonucleotide) Template RNA (55-MER) 496N 500K 501S 543N 545K 557V 558A 559G 560V 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 687T 689Y 860V 864I 914R 915Y 920F 924M (identity: 100.0 %/100.0 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7uo4_A_1 identity=100.0%
queryA         3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
                :****************************************************************************************************:
7uo4_A_1       3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
SecStr          : HHHHHHHHS TT  EEEE SSSS  EEEEEEEEEESSS EEEEEEEEEEEEEEEEEETTTEEEEEEEEEEE  HHHHHHHHHHHHTTTT SSB  EEEE:    
ExpBur          :eeeebbeebbeeeebebeeebeeeeebeeebbbbeeeeebbbbbbbebeebbbbbbbeeeeeeeebbbbbbeeeeeebeebeebbeebeebebbbebebb:    

queryA       103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
                :****************************************************************************************************:
7uo4_A_1     103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
SecStr          :EEESSSSEEEEEEEEEE SSBHHHHHHHHHS  SS  HHHHHHHHHTTSS TTGGGSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEE:    
ExpBur          :ebeeeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeebbbbbbebeebbebbbebbeebbebbeebbebbebbeebbbe:    

queryA       203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
                :****************************************************************************************************:
7uo4_A_1     203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
SecStr          : B  GGGBBTTS B   SS EE STT    B TTTTTTTSTHHHHTTTTGGGSBGGG SSS B    TT    HHHHHHHHHHHSTT  S   SSGGG  :    
ExpBur          :bbbbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeebeeeeeeeeeeeeeeebbebbeebbeebbebbeeebebbbeebe:    

queryA       303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
                :****************************************************************************************************:
7uo4_A_1     303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
SecStr          :SHHHHHHHHHHHHHHTSSS TTS B  EE  EETTEE  EE  EE SSS EE  S   SSB    HHHHHHHHHSHHHHHHSSB    TT SS EEEBSS:    
ExpBur          :ebbbbbbbbbbbbbbbebbbeebbbebeeebebeeeebebbbbbbbebbbbbebeeeeeebeebeebbebbbebbbbeebeeeeebebeebebebebbee:    

queryA       403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
                :****************************************************************************************************:
7uo4_A_1     403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
SecStr          :SS   B B   EE HHHHHHHHHTT S TT SS    B   B TBHHHHHHHGGGG       HHHHHHHHHHHHHTTSS       GGG   S S S  :    
ExpBur          :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeeeebbbebbbebebbbebbbbbbbbbbbbbbbbbbbeebeebebebeebebeeeeeeb:    
Contact         :                                                                                             b   bb 

queryA       503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
                :****************************************************************************************************:
7uo4_A_1     503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
SecStr          : TTGGGT  HHHHHHSS HHHHHHHHHHHTTS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHHT SSSSB  S  STTTHHHHHH:    
ExpBur          :bbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeebbebebebbbbbbbbbebbbbebbebbeeeeebbbbbebebeebbbeebb:    
Contact         :                                        b b           bbbb        b       b  b         b b bb       

queryA       603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
                :****************************************************************************************************:
7uo4_A_1     603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
SecStr          :HHHSSS SSEEEEEEE TTTTTS  HHHHHHHHHHHTSS SSSS HHHHHHHHHHHHHHTTS EEETTSSEEE  SS  TTSSSSTTHHHHHHHHHHHHH:    
ExpBur          :eebbeebeeeebbbbebbbbbbbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbb:    
Contact         :                                                                               bbbb b b             

queryA       703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
                :****************************************************************************************************:
7uo4_A_1     703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
SecStr          :HHHHHHTS STT   HHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHH  EEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHTS    GGGEEE :    
ExpBur          :bbbbbbbbebeebeeeebeebbeebbebbbeeeeeeeebbeebbebbeebbbbbbebebbbbbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbee:    

queryA       803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
                :****************************************************************************************************:
7uo4_A_1     803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
SecStr          :  GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSSGGGG TT HHHHHHHHHHHGGGGG SSHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eebeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeebebbebbebbbebbbebbbbeebeeeeebebbebbbebbeebbeeeeeeeeee:    
Contact         :                                                         b   b                                      

queryA       903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :***************************:
7uo4_A_1     903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :S      SSSSSTTSHHHHHGGGSTT :    
ExpBur          :eeeeeeeeeeeeebeeeebeebbeeee:    
Contact         :           bb    b   b

Input Residue Numbers for Focused Sites

ex) 2,15,123