[pdbjlvh2]Protein Model on 7rdz_A_1_H

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7rdz_A_1_H_1

Protein Model on 7rdz_A_1_H_1 (TEMPLATE: 7rdz )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [927 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		H 1 (T)	polymer(polyribonucleotide)	Template RNA	408Q 496N 500K 501S 507N 511K 541Q 543N 545K 557V 558A 559G 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 687T 689Y 860V 864I 914R 915Y 920F 924M (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7rdz_A_1 identity=100.0%

queryA         3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
                :****************************************************************************************************:
7rdz_A_1       3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
SecStr          : HHHHHHHHH SS   EEESSSSS  EEEEE  EEE SS EEE  EEEEEE EEEEEETTTEEEEEEEE  B  HHHHHHHHHHHHHHTT SSB  EEEE:    
ExpBur          :eeeebbeebbeebebebeeebeeeeeeebebbbbebeeebbbbbbbebeebbbbbbbeeeeeeebbbbbbbbeeeebbeebeebbeebeebebbbebbbb:    

queryA       103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
                :****************************************************************************************************:
7rdz_A_1     103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
SecStr          :EEESSSSEEEEEEEEEE SSBHHHHHHHHHS  TTS  HHHHHHHHTTSS S GGGSTTSS TTT THHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE:    
ExpBur          :ebebeeeeebbbbbbebbebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbeebeebbbe:    

queryA       203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
                :****************************************************************************************************:
7rdz_A_1     203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
SecStr          :EE  GGGBBTTS B   TT EE STT  EEE HHHHHHHHHHHHHTTTTGGGGBGGG SSS B    TT    HHHHHHHHHHSSTT  S   SSGGG S:    
ExpBur          :bbbbbbbbbbebbbbbbeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeebeeeeeebbeebeebbeebbebbeeebbbbbeebe:    

queryA       303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
                :****************************************************************************************************:
7rdz_A_1     303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
SecStr          :SHHHHHHHHHHHHHHGGGS GGG EEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHHSHHHHHHHSEE   SS SS EEEE S:    
ExpBur          :ebbbbbbbbbbbbbbbbbbeeebbbbbeeebebeeeebebbbbbbbebbbbbebeeeeeebeebeebeebbbebbbbebeeeeeebebeebebebebbbe:    

queryA       403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
                :****************************************************************************************************:
7rdz_A_1     403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
SecStr          :SS     B   EE HHHHHHHHHTT S TT S     B   B TTHHHHHHGGGGG       HHHHHHHHHHHHHHT S       TTT   S S SB :    
ExpBur          :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeeeebebbbebbbbbebbbebbbbbbbbbbbbbbbbebbeebeebbbebeebebeeeeeeb:    
Contact         :     b                                                                                       b   bb 

queryA       503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
                :****************************************************************************************************:
7rdz_A_1     503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
SecStr          : TTGGGS BHHHHHHHS HHHHHHHHHHHTTS    EEEEEE    BSS S  EEEEE HHHHHHHHHHHHHHHHHHHT SSSSB  S  STTTHHHHHH:    
ExpBur          :bbbbeeeeebeebbeebeeebbeebbebbbebbbbbbbbbebeeebbeeeebebebbbbbbbbbbbebbbbebbebbbeeeebbbbbeeeeeebbbbebb:    
Contact         :    b   b                             b b b           bbb         b       b  b         b b bb       

queryA       603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
                :****************************************************************************************************:
7rdz_A_1     603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
SecStr          :HHH SS SSEEEEE   TTTTTS  HHHHHHHHHHHHTT SSSS HHHHHHHHHHHHHHTTS EEESSS EEE  SS  TTSSSSHHHHHHHHHHHHHHH:    
ExpBur          :eebbeebeeeebbbbebbebbbbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbbbebbbbeebbbebbbbbbbbbbbbbbb:    
Contact         :                                                                               bbbb b b             

queryA       703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
                :****************************************************************************************************:
7rdz_A_1     703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
SecStr          :HHHHHHHS STT   HHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHS EEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHHS    GGG EEE:    
ExpBur          :bbbbbbbbbbeebeeeebeebbbbbbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeebbeeebbbbbebbbbbbbbbbbbbbeeeebbee:    

queryA       803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
                :****************************************************************************************************:
7rdz_A_1     803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
SecStr          :S GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSSTT SHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :eeeeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeeebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeebeee:    
Contact         :                                                         b   b                                      

queryA       903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :***************************:
7rdz_A_1     903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :SS   S   GGGGGSHHHHHHHTSTT :    
ExpBur          :eeeeeeeeebeebbeeebbeebbeeee:    
Contact         :           bb    b   b

Protein Model on 7rdz_A_1_H_1 (TEMPLATE: 7rdz )

Input Residue Numbers for Focused Sites