[pdbjlvh2]Protein Model on 7rdy_A_1_H

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7rdy_A_1_H_1

Protein Model on 7rdy_A_1_H_1 (TEMPLATE: 7rdy )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [927 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		H 1 (T)	polymer(polyribonucleotide)	Template RNA	408Q 496N 500K 501S 507N 541Q 543N 545K 557V 558A 559G 569R 577K 580A 590G 592S 594F 595Y 682S 683G 684D 685A 686T 687T 689Y 860V 861S 864I 914R 915Y 920F 924M (identity: 100.0 %/100.0 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7rdy_A_1 identity=100.0%

queryA         3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
                :****************************************************************************************************:
7rdy_A_1       3:DAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFF: 102
SecStr          : TTHHHHHHHTTS  EEEESSSSS    EE   EEESSS EEE   EE S  EEEEE TTS EEEEEEE  B  HHHHHHHHHHHHHSTT SSB  EEEE:    
ExpBur          :eeeebbeebbeebebebeeeeeeeeeeebebbebeeeeebbbbbbbebeebbbbbbbeeeeeeeebbbbbbbeeeebbeebeebbeebeebebbbebbbb:    

queryA       103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
                :****************************************************************************************************:
7rdy_A_1     103:KFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIV: 202
SecStr          :EEESSSSEEEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS SSGGGSTTTT TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTEE:    
ExpBur          :ebebeeeeebbbbbbebbbbbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeebbbbbbebeebbebbbebbeebbebbeebbebbebbeebbbe:    

queryA       203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
                :****************************************************************************************************:
7rdy_A_1     203:GVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCL: 302
SecStr          :EE  GGGBBTTS B   SS EE STT   EE HHHHHHHTTHHHHTTTTTTSSBGGG TTS B    TT    HHHHHHHHHHSSTT  S   SSGGG S:    
ExpBur          :bebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbeebebebbbbbeebe:    

queryA       303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
                :****************************************************************************************************:
7rdy_A_1     303:DDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALT: 402
SecStr          :STTSHHHHHHHHHHHTTSS GGG B  EEEEEETTEEEEEE EEEETTTEEEE S   SEE    HHHHHHHHHSHHHHHHTSEE   TT SS EEEE S:    
ExpBur          :ebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeebeebbbebbbbeeeeeeeebebeebebebebbee:    

queryA       403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
                :****************************************************************************************************:
7rdy_A_1     403:NNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSA: 502
SecStr          :SS     B   EE HHHHHHHHHTT S TT SS    B   B STTHHHHGGGGGG       HHHHHHHHHHHHHHT S       TTS   S S SB :    
ExpBur          :eeeeeeebeeeeebeebeebbeeeebbeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebebeeeeeeb:    
Contact         :     b                                                                                       b   bb 

queryA       503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
                :****************************************************************************************************:
7rdy_A_1     503:GFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNML: 602
SecStr          : TTGGGT BHHHHHHHS HHHHHHHHHHHTTS    EEEEEE    BSS S  EEEE  HHHHHHHHHHHHHHHHHHTT SSSSB SS  STTTHHHHHH:    
ExpBur          :bbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbbbbbbbebbbbebbebbeeeeebbbbbebeeeebbbbebb:    
Contact         :    b                                 b b b           bbb         b       b  b         b b bb       

queryA       603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
                :****************************************************************************************************:
7rdy_A_1     603:KTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTA: 702
SecStr          :HHHTSS SSEEEEE   TTHHHH  HHHHHHHHHHTTSS SSSS HHHHHHHHHHHHHHTTS EEE SS EEE  SS  TTSSSSHHHHHHHHHHHHHHH:    
ExpBur          :eebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebeebbbbbbbbbbbbbb:    
Contact         :                                                                               bbbbbb b             

queryA       703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
                :****************************************************************************************************:
7rdy_A_1     703:NVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTE: 802
SecStr          :HHHHHHSS SSS   HHHHHHHHHHHHHHHS SS  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHHHS    TTS EEE:    
ExpBur          :bbbbbbebbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbeebbeeebbbbbebbbbbbbbbbbbbbeeeebbeb:    

queryA       803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
                :****************************************************************************************************:
7rdy_A_1     803:TDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDM: 902
SecStr          :  GGG  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHHEESSGGGGSSTT SHHHHHHHHHTGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHS:    
ExpBur          :eebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeeeeebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeeeee:    
Contact         :                                                         bb  b                                      

queryA       903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :***************************:
7rdy_A_1     903:YSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :SSS  SS  GGGTTSHHHHHTTSSTT :    
ExpBur          :eeeeeeeeebeeebeeeebeebbeeee:    
Contact         :           bb    b   b

Protein Model on 7rdy_A_1_H_1 (TEMPLATE: 7rdy )

Input Residue Numbers for Focused Sites