#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7ozu_A_1_D_1

Protein Model on 7ozu_A_1_D_1 (TEMPLATE: 7ozu )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(queryA) A 1 (A) polymer(polypeptide(L)) [814 aa] Replicase polyprotein 1ab :R1AB_SARS2
2 b D 1 (P) polymer(polyribonucleotide) Product RNA 513R 758L 759S 760D 761D 813C 814S 836R 840A 849K 854L 858R 861S 865D (identity: 100.0 %/97.8 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7ozu_A_1 identity=97.8%
queryA        31:VYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFKFRIDGDMVPHISRQ-------------: 117
                :********************                                                                                :
7ozu_A_1      31:VYRAFDIYNDKVAGFAKFLK-------------------------------------------------------------------XXXXXXXXXXXXX:  63
SecStr          : EEEEEEESSS EEEEEEE --------------------------------------------------------------------------------:    
ExpBur          :eebbebeeeeebbbbbebee--------------------------------------------------------------------------------:    

queryA       118:------------------------------------------------------RLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 163
                :                                                      **********************************************:
7ozu_A_1      64:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWY: 163
SecStr          :------------------------------------------------------   S BHHHHHHHHHS BTTB HHHHHHHHHTTSS HHHHHSTTSS:    
ExpBur          :------------------------------------------------------eebebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebb:    

queryA       164:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 263
                :****************************************************************************************************:
7ozu_A_1     164:DFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTK: 263
SecStr          : TTT TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTEE B  GGGBBTTS B    S EE STTT   B HHHHHHHHHHHHHTTGGGGGGBGGG SSS:    
ExpBur          :bbbebeebbebbeebbeebbebbeebbebbeebeeebbebbbbbbbbbbebebeeeeeeeeeeeeebebebbbbbbbbbbbbbbbebbebbebeeeeeee:    

queryA       264:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHS: 363
                :**************************************************************************************************  :
7ozu_A_1     264:PYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLXX: 363
SecStr          : B    TT    HHHHHHHHHHTSTT  S   SSGGG SSHHHHHHHHHHHHHHTSSS TTSSEEEEEEEEETTEEEEEEEEEEETTTEEEE S    --:    
ExpBur          :eeeeeeeeeeebbeebeebbeebbebbeeebbbbbeebeebbbbbbbbbbbbbbbebbeeebbbebeeebeeeeeeeebbbbbbbebbbbbebeeeee--:    

queryA       364:SRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 463
                :   *************************************************************************************************:
7ozu_A_1     364:XXXSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTM: 463
SecStr          :--- HHHHHHHHH HHHHHHHSB    TT SS EEEESSSS     B      HHHHHHHHHTT S TT S     B   B TTHHHHHHGGGGG     :    
ExpBur          :---eebeebbeebbbbebeeeeeebebeebebebebbeeeeeeeeebeeeeebeebeebbeeeebbeeebebebebebeeeebebbbebbbebebbeebb:    

queryA       464:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 563
                :****************************************************************************************************:
7ozu_A_1     464:CDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSIC: 563
SecStr          :  HHHHHHHHHHHHHTTSSS      GGG   S SSS   BTGGGT  HHHHHHHS HHHHHHHHHHHTTS    EEEEEE    BSS    EEEE  HH:    
ExpBur          :bbbbbbbbbbbbbbbbbeebebbebebeebeeeebeeebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbb:    
Contact         :                                                 b                                                  

queryA       564:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 663
                :****************************************************************************************************:
7ozu_A_1     564:STMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVL: 663
SecStr          :HHHHHHHHHHHHHHHHHT  SSSB TT  STTTHHHHHHHHHTTT SSEEEEEE  TTHHHH  HHHHHHHHHHHTTT TTTS HHHHHHHHHHHHHHTT:    
ExpBur          :bbbbbebbbbebbebbeeeeebbbbbeeeeeebbbbebbeebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbb:    

queryA       664:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 763
                :****************************************************************************************************:
7ozu_A_1     664:SEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAV: 763
SecStr          :T EEEETTEEEE  S   TT TTHHHHHHHHHHHHHHHHHHHHHHHS STT   HHHHHHHHHHHHHHSS  S  HHHHHHHHHHHHHHEEEEEETTEEE:    
ExpBur          :bbbbbbeebbbebebbbbeebebbebbbbbbbbbbbbbbbbbbbbbbebeebeeeebeebbeebbebbbeeeeeeeebbebbbebbeebbbbbbebeebb:    
Contact         :                                                                                              bbbb  

queryA       764:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 863
                :****************************************************************************************************:
7ozu_A_1     764:VCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLA: 863
SecStr          :EEEEHHHHHHTSS  HHHHHHHHHHTT     GGG EEES TTT  S BTTBEEEEEEETTEEEEEEE  HHHHHHHHH  SSGGGGSSHHHHHHHHHHH:    
ExpBur          :bbbbeebbeebbbbbbebbbbbbbbbbbbbbeeeebbeeeebeebbeebeebbbbebebeeeebbbbbbebbebbbbbbbbeeeeeeeeeebbeebbebb:    
Contact         :                                                 bb                     b   b        b    b   b  b  

queryA       864:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMYSVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :*********************************             ********************:
7ozu_A_1     864:IDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTXXXXXXXXXXXXXDNTSRYWEPEFYEAMYTPHT: 929
SecStr          :HHTSGGGGSSSHHHHHHHHHHHHHHHHHHHHH -------------  GGGGTSHHHHHGGGSTT :    
ExpBur          :bebbbbeebeeeeebebbebbbebbeebbeeee-------------eeeeeeeeeebbeebbeeee:    
Contact         : b

Input Residue Numbers for Focused Sites

ex) 2,15,123