[pdbjlvh2]Protein Model on 7doi_A_1_O

#WARNING:no index is registered index "YP_009725307.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009725307.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7doi_A_1_O_1

Protein Model on 7doi_A_1_O_1 (TEMPLATE: 7doi )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	A 1 (A)	polymer(polypeptide(L)) [906 aa]	RNA-directed RNA polymerase :R1AB_SARS2
2	b		O 1 (P)	non-polymer(HCU)	[(2R)-4-(2-azanyl-6-oxidanylidene-3H-purin-9-yl)-2-(hydroxymethyl)butyl] dihydrogen phosphate	545K 623D 682S 687T 691N 760D (identity: 100.0 %/97.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7doi_A_1 identity=97.8%

queryA         4:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 103
                :****************************************************************************************************:
7doi_A_1       5:AQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHDFFK: 104
SecStr          : HHHHHHHHGGG   EEESSSTTS   EEEEEEEE SS EEEEEEEE SEEEEEEE TTS EEEEEEEEE   SHHHHHHHHHHHHHTT TTB  EEEEE:    
ExpBur          :eeebbeebbeeeebebeeebeeeeeeebebbbbeeeeebbbbbbbeeeebbbbbbeeeeeeeeeebbbbbbeeeebbeebeebbeebeebebbbebbbbe:    

queryA       104:FRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 203
                :****  **********************************************************************************************:
7doi_A_1     105:FRIDXXMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAGIVG: 204
SecStr          :E   -- EEEEEEEEE SSBHHHHHHHHHS  TTS HHHHHHHHHTTSS GGGGGSTT S TTT TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTEEE:    
ExpBur          :beee--eebbbbbbebbebbbbbbbbbbbbbeeeebeebeebbeebebbeeebbeeeebbbbbebeebbebbeebbeebbebbeebbebbebbeebbbeb:    

queryA       204:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 303
                :****************************************************************************************************:
7doi_A_1     205:VLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVNCLD: 304
SecStr          :E  GGGBBTT  B   TT EE  TT   EE HHHHHHHHHHHHHTTTTGGGGBGGG TTS B    TT    HHHHHHHHHHH TT  S   SSGGG SS:    
ExpBur          :ebbbbbbbbebbbbebeebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbebbeebbeebbebbeeebbbbbeebee:    

queryA       304:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 403
                :****************************************************************************************************:
7doi_A_1     305:DRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAALTN: 404
SecStr          :HHHHHHHHHHHHHHTTTS TTSSEEEEEEEEETTEEEEEEEEEEETTTEEEE S   SEES   HHHHHHHHH HHHHHHHSEE    S SS EEEESSS:    
ExpBur          :bbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeeebebbbbbbbbebeeeeeebebeebebebebbeee:    

queryA       404:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 503
                :****************************************************************************************************:
7doi_A_1     405:NVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDKSAG: 504
SecStr          :S     B   EE HHHHHHHHHTT S TT S     B   B TTHHHHHHGGGGS       HHHHHHHHHHHHHHTTT       STT   S SSS   :    
ExpBur          :eeeeeebeeeeebeebeebbeeeebeeeebebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbbbebeebeeeeeeeebb:    

queryA       504:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 603
                :****************************************************************************************************:
7doi_A_1     505:FPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHNMLK: 604
SecStr          :TTGGGT  HHHHHHHS HHHHHHHHHHTTTS    EEEEEE    BSS    EEEE  HHHHHHHHHHHHHHHHHHHT  SSSB TT  STTTHHHHHHH:    
ExpBur          :bbbeeeeebeebbeebeeeebeebbebbbebbbbbbbbbebeeebeeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbeeebeebbbbebbe:    
Contact         :                                         b                                                          

queryA       604:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 703
                :****************************************************************************************************:
7doi_A_1     605:TVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAVTAN: 704
SecStr          :HHSSS SSEEEEE   TTTTTS  HHHHHHHHHHHGGG TTT  HHHHHHHHHHHHHHHTS EEESSSEEEE  SS  TTSTTHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeebbbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbbbbb:    
Contact         :                   b                                                          b    b   b            

queryA       704:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 803
                :****************************************************************************************************:
7doi_A_1     705:VNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCWTET: 804
SecStr          :HHHHHSS GGG   HHHHHHHHHHHHHHHT  S  HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS  HHHHHHHHHHTTS    TTS EEES:    
ExpBur          :bbbbbbbbbeebeeeebbebbbebbebbbeeeeeeeebbeebbebbeebbbbbbeeeebbbbbbeebbeeebbbebebbbbbbbbbbbbbbeeeebbebe:    
Contact         :                                                        b                                           

queryA       804:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHMLDMY: 903
                :********************************************************************************************        :
7doi_A_1     805:DLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELXXXXXXXX: 904
SecStr          : TTS  S BTTEEEEEEEETTEEEEEEEE HHHHHHHHHEESSTTSSSSSSHHHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHS  --------:    
ExpBur          :ebeebbeebeebebbebebeeeebbbbbbebbebbbbbbbbeeeebeeeeebbeebbebbbebbbbeeeeeeebbebbebbbebbeebeeee--------:    

queryA       904:SVMLTNDNTSRYWEPEFYEAMYTPHT: 929
                :          ****************:
7doi_A_1     905:XXXXXXXXXXRYWEPEFYEAMYTPHT: 930
SecStr          :----------  SSTHHHHTTTSS  :    
ExpBur          :----------eeeeeebbeebbeeee:

Protein Model on 7doi_A_1_O_1 (TEMPLATE: 7doi )

Input Residue Numbers for Focused Sites