#WARNING:no index is registered index "YP_009724389.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724389.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [927 aa] | RNA-directed RNA polymerase :R1AB_SARS2 | |
2 | b | F 1 (G) | polymer(polyribonucleotide) | RNA (5'-R(*UP*GP*UP*UP*CP*GP*AP*CP*GP*AP*CP*AP*CP*AP*GP*G*(F86)P*G)-3') | 4891D 4937K 4949V 5015D 5074S 5150L 5151S 5152D 5205C 5206S 5228R 5232A 5241K 5250R 5253S 5254L 5257D (identity: 100.0 %/99.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7c2k_A_1 identity=99.8% |
queryA 4393:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD:4492 :****************************************************************************************************: 7c2k_A_1 3:SADAQSFLNRVCGVSAARLTPCGTGTSTDVVYRAFDIYNDKVAGFAKFLKTNCCRFQEKDEDDNLIDSYFVVKRHTFSNYQHEETIYNLLKDCPAVAKHD: 102 SecStr : HHHHHHHHHHHTTS EEE SS SS S EEEEEESSS EEEEEE SB EEE GGG EEEEE EEE HHHHHHHHHHHHHHTT SSB : ExpBur :eeeeeebbeebeeeeeeebeeeeeeeeeebeebbbbeeeeebbbbbebeeeebbbbbbeeeeeeeeebbbbbbeeeeebbeebeebbeebeebebbbebe: queryA 4493:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG:4592 :****************************************************************************************************: 7c2k_A_1 103:FFKFRIDGDMVPHISRQRLTKYTMADLVYALRHFDEGNCDTLKEILVTYNCCDDDYFNKKDWYDFVENPDILRVYANLGERVRQALLKTVQFCDAMRNAG: 202 SecStr :EEEE SSSS EEEEEE S SSBHHHHHHHHHS TTS HHHHHHHHHTTS HHHHHSTTTT SSS TTHHHHHHTTHHHHHHHHHHHHHHHHHHHHHT: ExpBur :bbeeebeeeebbbbbbbebbebbbbbbbbbbbbbeeeebebbeebbeebebbeeebbeeeebbbbbeeeebbebbeebbeebbebbebbbebbebbeeeb: queryA 4593:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN:4692 :****************************************************************************************************: 7c2k_A_1 203:IVGVLTLDNQDLNGNWYDFGDFIQTTPGSGVPVVDSYYSLLMPILTLTRALTAESHVDTDLTKPYIKWDLLKYDFTEERLKLFDRYFKYWDQTYHPNCVN: 302 SecStr :EEEE GGGBBSS B SS EE STT EEE HHHHHHHTHHHHHTTGGGGGGBTTSSTTS B TT HHHHHHHHHHH TT S SSGGG: ExpBur :bebebbbbbbbbebbbbebbebeeeeeeebebebbbbbbbbbbbbbbbebbebbbbeeeeeeeeeeeeeeeeeebbeebeebbeebbebbeeebbbbbee: queryA 4693:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA:4792 :****************************************************************************************************: 7c2k_A_1 303:CLDDRCILHCANFNVLFSTVFPPTSFGPLVRKIFVDGVPFVVSTGYHFRELGVVHNQDVNLHSSRLSFKELLVYAADPAMHAASGNLLLDKRTTCFSVAA: 402 SecStr : SSHHHHHHHHHHHHHHTTSS TTS EEEEEEEEETTEEEEEEEEEEETTTEEEE S SBS HHHHHHHHH HHHHHHTSEE TT SS EEEE: ExpBur :beebbbbbbbbbbbbbbbebbeeebbbebeeebebeeeeeebbbbbbbebbbbbebeeeeeebeebeebbebbbebbbbebbeeeeebebeebebebebb: queryA 4793:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK:4892 :****************************************************************************************************: 7c2k_A_1 403:LTNNVAFQTVKPGNFNKDFYDFAVSKGFFKEGSSVELKHFFFAQDGNAAISDYDYYRYNLPTMCDIRQLLFVVEVVDKYFDCYDGGCINANQVIVNNLDK: 502 SecStr :SSSS B EE HHHHHHHHHTT S TT S B B TTHHHHHHGGGGG HHHHHHHHHHHHHHT S GGG TTS: ExpBur :eeeeeeeeebeeeeebeebeebbeeeebbeeeeebeeebebeebeeebbbebbbebebbeebbbbbbbbbbbbbbbbebbeebebbebebeebeeeebee: Contact : b queryA 4893:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN:4992 :****************************************************************************************************: 7c2k_A_1 503:SAGFPFNKWGKARLYYDSMSYEDQDALFAYTKRNVIPTITQMNLKYAISAKNRARTVAGVSICSTMTNRQFHQKLLKSIAATRGATVVIGTSKFYGGWHN: 602 SecStr : BTGGGT HHHHHHHS HHHHHHHHHHTTTS EEEEEE BSS EEEE HHHHHHHHHHHHHHHHHHTT SSSSB S STTTHHHH: ExpBur :ebbbbbeeeeebeebbeebeeeebeebbebbbebbbbbbbebebeeebbeeeebebebebbbbbbbbbebbbbebbeebeeeeebbbbbebebeeebbee: Contact : b b queryA 4993:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV:5092 :****************************************************************************************************: 7c2k_A_1 603:MLKTVYSDVENPHLMGWDYPKCDRAMPNMLRIMASLVLARKHTTCCSLSHRFYRLANECAQVLSEMVMCGGSLYVKPGGTSSGDATTAYANSVFNICQAV: 702 SecStr :HHHHHTSS SSEEEEE TTHHHH HHHHHHHHHHHHTT SSS HHHHHHHHHHHHHHHTS EEEESSEEEE S TT TTHHHHHHHHHHHHHH: ExpBur :bbeebbeebeeeebbbbebbebebbbbbbbbbbbbbbbbbbbeeebeeeeebbbbbbbbbbbbbbbbbbebbbbebebbbbeebebbebbbbbbbbbbbb: Contact : b b queryA 5093:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW:5192 :****************************************************************************************************: 7c2k_A_1 703:TANVNALLSTDGNKIADKYVRNLQHRLYECLYRNRDVDTDFVNEFYAYLRKHFSMMILSDDAVVCFNSTYASQGLVASIKNFKSVLYYQNNVFMSEAKCW: 802 SecStr :HHHHHHHHTS GGG HHHHHHHHHHHHHHHS S HHHHHHHHHHHHHHEEEEEETTEEEEEEEHHHHHHTSS HHHHHHHHHHHHS TTS E: ExpBur :bbbbbbbbbbbbeebeeeebeebbbebbebbbeeeeeeeebbeebbebbeebbbbbbebeebbbbbbbebbeebbbbebebbbbbbbbbbbbbbeeeebb: Contact : bbb queryA 5193:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML:5292 :****************************************************************************************************: 7c2k_A_1 803:TETDLTKGPHEFCSQHTMLVKQGDDYVYLPYPDPSRILGAGCFVDDIVKTDGTLMIERFVSLAIDAYPLTKHPNQEYADVFHLYLQYIRKLHDELTGHML: 902 SecStr :EES SSS S BTTBEEEEEE SSSEEEEEE HHHHHHHHHEESSGGGGSSTT HHHHHHHHHHHGGGGGSSSHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :eeeebeebbeebeebebbebeeeeeebbbbbbebbebbbbbbbbeeeeebebbeebeebbebbbebbbbeebeeeebbebbebbbebbeebbeeeeeeee: Contact : bb b b b b bb b queryA 5293:DMYSVMLTNDNTSRYWEPEFYEAMYTPHT:5321 :******* ********************: 7c2k_A_1 903:DMYSVMLXXDNTSRYWEPEFYEAMYTPHT: 931 SecStr :HHSS -- GGGSSTHHHHHTTS : ExpBur :eeeeeee--eeeeebeeeeebeebbeeee: |