[pdbjlvh2]Protein Model on 8sw1_A_1_B

Protein Model on 8sw1_A_1_B_1 (TEMPLATE: 8sw1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [864 aa]	Puromycin-sensitive aminopeptidase :PSA_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [6 aa]	Polyglutamine peptide	213Q(E) 214A 351A 353A 354M 355E 389E 411E 469S(D) 472F (identity: 80.0 %/35.2 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8sw1_A_1 identity=35.2%

queryA        75:RLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLS----QGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170
                :***    *  *   * * *         * *          **  *                 *        *        *  *  *          * :
8sw1_A_1      36:RLPADVSPINYSLCLKPDLLD-----FTFEGKLEAAAQVRQATNQIVMNCADIDIITASYAPEGDEEI-HATGFNYQNEDEKVTLSFP----------ST: 119
SecStr          :    SEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS  SEEEEE  S EEEEEEEEETTS  E-E  EEEEETTTTEEEEE S----------S :    
ExpBur          :ebeeebebebbebebbbeeee-----eebebebebebebeeebeebbbbbbebebeebbbbbeeeeee-ebeeeeeeeeeebbbbebe----------ee:    

queryA       171:VKDSQYEMDSEFEGELADDLAGFYRSEYM--EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTE: 268
                :           * *** *   ***** *    * **   * **  * ***  *** **** ** * * *  ***  *****       * * * *     :
8sw1_A_1     120:LQTGTGTLKIDFVGELNDKMKGFYRSKYTTPSGEVR-YAAVTQFEATDARRAFPCWDEPAIKATFDISLVVPKDRVALSNM-NVIDRKPYPDDENLVEVK: 217
SecStr          :  SEEEEEEEEEEEE BSSSSEEEEEEE  SS   E-EEEEEE TTTTGGGTS B   TTS BEEEEEEEEETTSEEEESS- EEEEEE SS TTEEEEE:    
ExpBur          :beeeebebebebebebbeeeebbbbbebebeeeeee-ebbbbbbeebbbbbbbbbbbbbeebbbbbbbbbbeeebebbbbb-eeeeeeeeeeeeebbbbe:    
Contact         :                                            bb                                                      

queryA       269:FHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLL: 368
                :*  ** ***** ** * * * **     **  *    *    *  *  ** *    * *       ****** * *   ** **************  **:
8sw1_A_1     218:FARTPVMSTYLVAFVVGEYDFVETRSKDGVCVRVYT-PVG-KAEQGKFALEVAAKTLPFYKDYFNVPYPLPKIDLIAIADFAAGAMENWGLVTYRETALL: 315
SecStr          :EEE  SB GGG  EEEE  EEEEEE TT  EEEEEE-STT- GGGGHHHHHHHHHHHHHHHHHHT   SSSEEEEEEETT TT EE  TTEEEEEHHHH :    
ExpBur          :bbebeebbbbbbbbbbbbbeebeeebeeebebebbb-bee-eeebbebbbebbbebbbbbeebbebebebebbbbbbbbebeeeebbbbbbbbbeeeebb:    
Contact         :                                                                                  b bbb             

queryA       369:FDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTPASEINTPAQI: 468
                : **  * **    *  *  ************* ***  *********  ***  *   *        *  *  *    ***  ***          *   :
8sw1_A_1     316:IDPKNSCSSSRQWVALVVGHELAHQWFGNLVTMEWWTHLWLNEGFASWIEYLCVDHCFPEYDIWTQFVSADYTRAQELDALDNSHPIEV---SVGHPSEV: 412
SecStr          :  TTT  STHHHHHHHHHHHHHHHTTBTTTEEESSGGGHHHHHHHHHHHHHHHHHHH GGG HHHHHHHHHHHHHHHHHTSSS   S  ---   STTSH:    
ExpBur          :beeeeeeebbebebbbebbbbbbbbbbbbbbbbebbbbbbbbbbbbbbbbbbbbeeebeebebbbebbeebbbebbeebbeeebeebbe---ebeebeeb:    
Contact         :                    b                     b                                                         

queryA       469:SELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITV------DTSTGTLS: 562
                : * ************ ***        ** *   **  *   *     **  *  *               ** ** ***** * *      *     **:
8sw1_A_1     413:DEIFDAISYSKGASVIRMLHDYIGDKDFKKGMNMYLTKFQQKNAATEDLWESLENASGK-------PIAAVMNTWTKQMGFPLIYVEAEQVEDDRLLRLS: 505
SecStr          :HHH SHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHSTTEEE HHHHHHHHHHHH S------- HHHHHHHHHSS   EEEEEEEEEETTEEEEEEE:    
ExpBur          :eeeeeebbebbbbbbbbbbbebbeeeebeebbeebbeebeeeebbbeebbebbeebbee-------ebeebbebbbeeebbbbbebeeeeeeeebbbebe:    
Contact         :b  b                                                                                                

queryA       563:QEHFLLDPDSNVTRPSEFNYVWIVPIT--SIRDGRQQQDYWLIDVRAQNDLF-STSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRA: 659
                :*  *            *    * ****     *  *     * *    *          ** ***   * **  *             ** *  *   * :
8sw1_A_1     506:QKKFC----AGGSYVGEDCPQWMVPITISTSEDPNQAKLKILMDKPEMNVVLKNVKPDQWVKLNLGTVGFYRTQYSSAMLESLLPGI-RDLS-LPPVDRL: 599
SecStr          :EEEEE----TTEE   SS     EEEEEEETTBTTS SEEEEE SSEEEEEESS  TTS EEESGGG SSSEEEE HHHHHHHHHHH-HTS -S HHHHH:    
ExpBur          :bebbb----bebeeeeeeebebbbbbbbbbeeebeeeeeebbbeeeebebebeebeeebbbbbbbbbbbbbbbbbbeebbeebeebb-eeee-bbebbbb:    

queryA       660:QIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNNTNNWREIP-ENLMDQYSEVNAIS: 758
                :   ** * ** *        *        *  *  *      *            *       *    *           *   * *   *         :
8sw1_A_1     600:GLQNDLFSLARAGIISTVEVLKVMEAFVNEPNYTVWSDLSCNLGILSTLLSHTDFYEEIQEFVKDVFSPI-----GERLGWDPKPGEGHLDALLRGLVLG: 694
SecStr          :HHHHHHHHHHHTTSS HHHHHHHHGGGTT   HHHHHHHHHHHHHHHHHGGGSS HHHHHHHHHHHHHHH-----HHHH SS  TT  HHHHHHHHHHHH:    
ExpBur          :bbbbbbbbbbbbeebebbebbebbebbeebebebbbebbbebbeebbebbbbbebeebbbebbbebbbeb-----beebebeeeeeeeebebebbbebbb:    

queryA       759:TACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNPDLIRKQD: 858
                :     *     *     **   *          *** **      *     *        *    *       *            *   *     * **:
8sw1_A_1     695:KLGKAGHKATLEEARRRFKDHVE--GKQILSADLRSPVYLTVLKHGDGTTLDIMLKLHKQADMQEEKNRIERVLGATLLPDLIQKVLTFALSEE-VRPQD: 791
SecStr          :HHHHHT HHHHHHHHHHHHHHHT--TS    STTHHHHHHHHHHT  HHHHHHHHHHHHS SSHHHHHHHHTTGGG  SHHHHHHHHHHHTSTT-S GGG:    
ExpBur          :bbbebebeebbeebeebbeebee--eeeebeeebbebbbebbbbeeeeebbeebbebbeebeeeebbbbbbebbbbbeeeebbeebbebbbeee-beeeb:    

queryA       859:ATSTIISITNNVI-GQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWVKENKEV: 957
                :  * *         *    * *   **  * * * ** *  * **      *           *          *  *   *  *    *  * *   * :
8sw1_A_1     792:TVSVIGGVAGGSKHGRKAAWKFIKDNWEELYNRYQGG-FLISRLIKLSVEGFAVDKMAGEVKAFFESHPAP---SAERTIQQCCENILLNAAWLKRDAES: 887
SecStr          :HHHHHHHHHTT HHHHHHHHHHHHHTHHHHHHHHTTS-HHHHHHHHHHHTT   HHHHHHHHHHHHHS  G---GGHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbebbebbeebbeebbebbeeebeebeeebeee-ebbbebbeebbeebbeeebbeebeebbeeeebe---ebeebbeebbeebebbbebbeebeee:    

queryA       958:VLQWFTE: 964
                :  *    :
8sw1_A_1     888:IHQYLLQ: 894
SecStr          :HHHHHHH:    
ExpBur          :beebbee:

Protein Model on 8sw1_A_1_B_1 (TEMPLATE: 8sw1 )

Input Residue Numbers for Focused Sites