Protein Model on 7zyf_B_1_H_1 (TEMPLATE: 7zyf )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [854 aa] Leucyl-cystinyl aminopeptidase, pregnancy serum form :LCAP_HUMAN
2 b H 1 (H) branched(oligosaccharide) alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 651S(Y) 688E(N) 690R(N) (identity: 0.0 %/36.1 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7zyf_B_1 identity=36.1%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKLNYTLSQGHRVVLRGVGGSQPPDIDKTELVEPTEYLVVHLKGSL: 170
                :*   ***    *  *   * * **        * ** *        *  ** **   *       **       **       *         *     *:
7zyf_B_1       9:WAQIRLPTAVVPLRYELSLHPNLTS-----MTFRGSVTISVQALQVTWNIILHSTGHNIS-----RVTFMXXXXSQEKQAEILEYAYHGQIAIVAPE-AL:  97
SecStr          :   SS  SSEEEEEEEEEEEEETTT-----TEEEEEEEEEEEESS EEEEEEE  S EEE-----EEEE ----    B EEEEETTTTEEEEEEEE-EE:    
ExpBur          :eeeeebeebbebeebbbebebebee-----eebebebebbbebeeebeebbbbbeebeee-----ebbbe----eeeeebeeeeeeebbbbbbebee-eb:    

queryA       171:VKDSQYEMDSEFEGELADDLAGFYRSEYM-EGNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLPEDPNWNVTEF: 269
                :     *    *          ***   *  * *  *  * **     **  ******** ** * *  *     ****** **  *  *         **:
7zyf_B_1      98:LAGHNYTLKIEYSANISSSYYGFYGFSYTDESNEKKYFAATQFEPLAARSAFPCFDEPAFKATFIIKIIRDEQYTALSNM-PKKSSVVLXDGLVQD--EF: 194
SecStr          : TTEEEEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B  STTS BEEEEEEE  SS   EESS- B      -    EE--EB:    
ExpBur          :eeeeeeebbbebebebeeebbbbbbbebebeeeeebebbbbbbbbbbbbebbbbbbbbebbbbbebebbbeeebebbbbb-eeeeeeee-eeeeeb--eb:    

queryA       270:HTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWGLVTYRENSLLF: 369
                :    ****** **** *      *  ** *  * * *  *   *  ***  *   * **       *** * *    *** ********* * **  ** :
7zyf_B_1     195:SESVKMSTYLVAFIVGEMKNLS-QDVNGTLVSIYAVPEKIGQVH--YALETTVKLLEFFQNYFEIQYPLKKLDLVAIPDFEAGAMENWGLLTFREETLLY: 291
SecStr          :    SB GGG  EEEE  EEEE-EESSS EEEEEE TTTGGG S--HHHHHHHHHHHHHHHHSSS   SSEEEEEEESS SSSB   TTEEEEEHHHH  :    
ExpBur          :eebeebbbbbbbbbbbbbbeee-eeeeebebbbbbbeebeeebe--bbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbbbbbbbbbbbbb:    

queryA       370:DPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDV----YRVMAVDALASSHPLSTPASEINTP: 465
                :*   **      *   ***************  ************   **            * *    *        *  * * **** *   *     :
7zyf_B_1     292:DSNTSSMADRKLVTKIIAHELAHQWFGNLVTMKWWNDLWLNEGFATFMEYFSLEKI-----FKELSSYEDFLDARFKTMKKDSLNSSHPIS---SSVQSS: 383
SecStr          : TTT  HHHHHHHHHHHHHHHHTTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHS-----SGGG THHHHHHHHHHHHHHHTSTT   SS---    SH:    
ExpBur          :eeeebbbebebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeee-----beebbbebebbebbbebbeebbbebbbebb---bebebe:    

queryA       466:AQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTTVRDIMNRWTLQMGFPVITVDTSTGTL--SQ: 563
                : ** * **  ** ** * * **   ******      ***   *       ***   *  *         *   *  **** ***  **      *   *:
7zyf_B_1     384:EQIEEMFDSLSYFKGSSLLLMLKTYLSEDVFQHAVVLYLHNHSYASIQSDDLWDSFNEVTNQ-----TLDVKRMMKTWTLQKGFPLVTVQKKGKELFIQQ: 478
SecStr          :HHHHTTSSHHHHHTHHHHHHHHHHHS HHHHHHHHHHHHHTTTTEEE HHHHHHHHHHTTTT-----SS HHHHTHHHHHSSS EEEEEEEETTEEEEEE:    
ExpBur          :eebbbbbbebbeebbbbbbbbbbeebeeeebeebbbebbeebeeeebebeebbebbbeebee-----eeebeebbebbbebebbbbbebeeeebebebeb:    

queryA       564:EHFLLDPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDV--RAQNDLFSTSGNEWVLLNLNVTGYYRVNYDEENWRKIQTQLQRDHSAIPVINRAQI: 661
                :* * *             * *  *      **    *               *    **  * *  *** * *    *     **           **  :
7zyf_B_1     479:ERFFLNMXXXXXXXXX-SYLWHIPLSYVTEGRNYSKYQSVSLLDKKSGVINLTEEVLWVKVNINMNGYYIVHYADDDWEALIHQLKINPYVLSDKDRANL: 577
SecStr          :EE     ----------     EEEEEEEEETT  EEEEEEEE SSEEEEE SS EEEEEESGGG SS EEEE HHHHHHHHHHHHH GGGS HHHHHHH:    
ExpBur          :ebbeeee----------eeebebbbbbbbbbeeeeeeeeeeebeeeeeebebeeebebbbbbbebebbbbbbbeeebbebbbebbeeebeebebbbbbbb:    
Contact         :                                                                                         b          

queryA       662:INDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDRSEVYGPMKNYLKKQVTPLFIHFRNN----------TNNWREIPENLMDQY: 751
                :**  * **   ***   *      *  *    *   **       *     *  * *       **  *    *           *   **    *    :
7zyf_B_1     578:INNIFELAGLGKVPLKRAFDLINYLGNENHTAPITEALFQTD---LIYNLLEKLGYM-DLASRLVTRVFKLLQNQIQQQTWTDEGTPSMRELRSALLE--: 671
SecStr          :HHHHHHHHHHTSS HHHHHHHGGGGGG   HHHHHHHHHHHH---HHHHHHHHHT H-HHHHHHHHHHHHHSHHHHHT  SSS S HHHHHHHHHHHH--:    
ExpBur          :bbbbbbbbeeeebebebbbebbebbeebeebbbbebbbebbe---bbbbbbbbeeee-ebbeebbeebbebbeebbeebebeeeeebbebebbeebbe--:    
Contact         :                          b b                                                b                      

queryA       752:SEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKLRAALACSKELWILNRYLSYTLNP: 851
                :        **      *      **  **              **            * *            *  *   *** *     *       ** :
7zyf_B_1     672:-------FACTHNLGNCSTTAMKLFDDWMASNGTQSLPTDVMTTVF--KVGAKTDKGWSFLLGKYISIGSEAEKNKILEALASSEDVRKLYWLMKSSLNG: 762
SecStr          :-------HHHHTT TTHHHHHHHHHHHHTTTTS S   TTSHHHHH--HHHTTSHHHHHHHHHHHTT   TTTHHHHHHHHTT S HHHHHHHHHHHHHT:    
ExpBur          :-------bbbebebeebbebbeeebeebbebeeeeebebbbbbbbb--bbbbeeeebbebbbebbeeeebbbbbbbbbebbbbbeeeebbeebbebbbee:    

queryA       852:DLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEETGFGSGTRALEQALEKTKANIKWV: 951
                :*  * *     *        *  * ****  ** **      **    *     *  ***   *     *     *  *    *    ***    ** * :
7zyf_B_1     763:DNFRTQKLSFIIRTVGRHFPGHLLAWDFVKENWNKLVQKFPLGSYTIQNIVAGSTYLFSTKTHLSEVQAFFENQSEATF--RLRCVQEALEVIQLNIQWM: 860
SecStr          :SSS GGGHHHHHHHHHHSTTTHHHHHHHHHHTHHHHHHHS TTSHHHHHHHHHHHTT   HHHHHHHHHHHHTS HHHH--T HHHHHHHHHHHHHHHHH:    
ExpBur          :eebebbbbbbbbebbbebeebbeebbebbbeebebbeeebebbbebbbbbbebbbebbbeeeebeebeebbeeeeeebb--ebebbebbbbbbeebbebb:    

queryA       952:KENKEVVLQWF: 962
                :  *      * :
7zyf_B_1     861:EKNLKSLTWWL: 871
SecStr          :HHHHHHHHHH :    
ExpBur          :eebbeebeeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123