Protein Model on 7sh0_A_1_E_1 (TEMPLATE: 7sh0 )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(AMPN_HUMAN) A 1 (A) polymer(polypeptide(L)) [896 aa] Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2 b E 1 (A) non-polymer(EPE) 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID 232E(N) 273P(V) 274K (identity: 33.3 %/36.7 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7sh0_A_1 identity=36.7%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
7sh0_A_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :   SS  SSEEEEEEEEEEEEETTTTE-----EEEEEEEEEEE S  SEEEEE  S EEEEEEEE SS GGG TT EE EEEEETTTTEEEEE S-S   :    
ExpBur          :eeeeebbebbebebbebbbebebeeee-----bebebebebebeeebeebbbbbeebeeeebebebeebeebeeeeeebeebebeeebbbbbebe-eebe:    

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
7sh0_A_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TTEE--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B  STT  BEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eebe--------bebbbebeeebeeebbbbbebebebeeeeeeebbbbbbbbbbbbebbbbbbbbebbbebbbebebeeebebbbbb-eeeeeeeeeeee:    
Contact         :                                                                     b                              

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
7sh0_A_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE TT  EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------ebeebeebbbbbbbbbbbbbeeeebebeeebebbbbbbeebeebbe--bbbebbeebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    
Contact         :              bb                                                                                    

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ******* * *        *     *   **    *   * * ** * * *:
7sh0_A_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEHHHH   TTT  HHHHHHHHHHHHHHHHHTTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG HHHHH-HHHHHHHHHHHTSTT   SS  :    
ExpBur          :bbbbbbebbbbeeebbbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bebbbebbeebbbeebbebbbe:    

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *                                  *  :
7sh0_A_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCLEXXXXXXXXXXXXXXMTSNMLAFLGENAEVKE: 536
SecStr          : --- SHHHHHHTSSHHHHHHHHHHHHHHHHHH HHHHHHHHHHHHHHTTTEEE HHHHHHHHHS    --------------  HHHHHHHHHHHHHHH:    
ExpBur          :b---eeeeebbbbbeebbebbbbbbbbbbbeebeeeebbebbbebbeebeeebbebeebbbbbbebeee--------------eeeeeeeeeeebeebee:    

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *  *     * ** **      **     *     * *  * *                     *       **  *    *** :
7sh0_A_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHSS S EEEEEEEETTEEEEEEEE  TT  SS TT---TSTTSSS    EEEEEEESS    EEEEE SSE-EEEE TT  S EEESGGG SSSE:    
ExpBur          :bbebbbebebbbbbbbeeeeeebebebbbbbbbbbeeeee---beebbeebebbbbbbbbbeeeeeeeeebbeeee-eeeebeeebebbbbbbbbbbbbb:    

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *:
7sh0_A_1     633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEETTTHHHHHHHHHHHHGGGS HHHHHHHHHHHHHHHHHTSS HHHHHHHTTGGGT   HHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHTHH:    
ExpBur          :bbbeeebbeebbebbeeebeebeebbbbbbbbbbbbbbbbebbebeebbebbebbeebeebbbbbbbbebbbebbebbeeeebeebbebbbebbbebbee:    

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
7sh0_A_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HT  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHHTS S   HHHHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHH:    
ExpBur          :bb-----eebeebe-eeebbeebbbeebbebbbebeeeebeeebeebbeebeebeeeeebebbbbebbb--bbbbeeeebbebbbebbeebbbbbbeebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
7sh0_A_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHHHT   HHHHHHHHHHHHH SSS GGGHHHHHHHHHTSHHHHHHHHHHHHHTHHHHHTTS TTSHHHHHHHHHHHTT  SHHHHHHHHHHHHHHTTT:    
ExpBur          :bbbbbbbeeeebbeebbebbbeeeebebbbbbebbebbbeeeebbebbbebbeeebeebeeebebbbebbbebbbbbbebbbbeebbeebeebbeebeee:    

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :  **        **    ****   *      *   *  :
7sh0_A_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :--T   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :--ebebebbebbbbbbebbbebbeebbeebeebbeebee:

Input Residue Numbers for Focused Sites

ex) 2,15,123