Protein Model on 7p7p_B_1_IA_1 (TEMPLATE: 7p7p )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(AMPN_HUMAN) B 1 (B) polymer(polypeptide(L)) [871 aa] Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2 b IA 1 (B) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 724K(Q) 725Q(Y) 965N (identity: 33.3 %/36.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7p7p_B_1 identity=36.2%
queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
7p7p_B_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :  SSS  SS  EEEEEEEEEEETTTTE-----EEEEEEEEEE SS  SEEEEE  S EEEEEEEEESSSSSS TT EE EEEEEGGGTEEEEE S-S   :    
ExpBur          :ebeeebbebbebbebebbbebebeeee-----bebebebebebeeebeebbbbbeebebeebebebeebeebbeeebebeebebeebbbbbbebe-ebbe:    

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
7p7p_B_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TT E--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B  STT  BEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eebe--------bebbbebeeebeeebbbbbebebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebbbbbebeeebebbbbb-eeeeeeeeeeee:    

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
7p7p_B_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE SSS EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHT    SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------ebeebeebbbbbbbbbbbebeeeebebeeebebbbbbbeebeebbe--bbbebbeebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ******* * *        *     *   **    *   * * ** * * *:
7p7p_B_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEHHHH   TTT  HHHHHHHHHHHHHHHHTTTBTTTBEESSGGGTHHHHHHHHHHHHHHHHHH GGG  TTTT-HHHHHHHHHHHHSTT   SS  :    
ExpBur          :bbbbbbebbbbeeebbbeeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebbbeeeb-bebbbebbebbbbeebbbbbee:    

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *                                  *  :
7p7p_B_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCXXXXXXXXXXXXXXXXXXXXXXXXXXXNAEVKE: 536
SecStr          : --- SHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSEE HHHHHHHHHT  ---------------------------  HHHH:    
ExpBur          :b---eeeeebbbbbbebbebbbbbbbbbbeeeeeeebbeebbbebbeebeeebbebebbbbbbbeee---------------------------eeebee:    

queryA       539:IMNRWTLQMGFPVITVDTSTGT--LSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *        * ** **      **     *     * *  * *                     *       **  *    *** :
7p7p_B_1     537:MMTTWTLQKGIPLLVVKQXXCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSXXXXNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHSS S EEEEEE --  EEEEEEE  SS  SSSHH---HHHH SS      EEE ----   EEE   SSE-EEE  SS  S   BSGGG SSSE:    
ExpBur          :bbebbbeeebbbbbbbee--eebebebbbbbbbbbeeeee---beeeeeebebbbbbbbe----eeeeeeebeeee-eebeeeeeeeeebbbbbbebbbb:    

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *      *   *       *   * * * *  *       *   *  *  *         ** *  *  * **   *      * **     *:
7p7p_B_1     633:VHYEGHGWDXXXXXLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKAXXMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEESS    -----  SSGGGS HHHHHHHHHHHHHHHHTTTS GGG --   TTTT   HHHHHHHHHHHHHHHHHHHTTT HHHHTTSTTHHHHTTHH:    
ExpBur          :bbbeeeeee-----beeebeeeeeebbbbbbbbebbbbbbebeebeee--eebebeebebeebbebebebbeebbebbeeeeeeebbebebeebeeebee:    
Contact         :                                                                                               bb   

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
7p7p_B_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HH  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHHTTSS   GGGHHHHH--HHHTTSHHHHHHHHHHHHH   HHHHHHH:    
ExpBur          :be-----eebeeee-eeeeeebebbeebbbbbbebebeebeeebeebbeebeeeeeeeebebbbbebbb--bbbbeeeebbebbbeebeebebbbbbebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
7p7p_B_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHHHS S HHHHHHHHHHHHH SSS GGGHHHHHHHHHSSTTSHHHHHHHHHHTHHHHHTTS TTSHHHHHHHHHHHTT   HHHHHHHHHHHHHHTTS:    
ExpBur          :bebbbbbeeeeebebbbeebbebeebebbbbbebbebbbeeeebbeebbebbeeebeebeeebebbbebbbbbbebbbebbbeeebbeebbebbeebeee:    

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :  **        **    ****   *      *   *  :
7p7p_B_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :--S   SHHHHHHHHHHHHHHHHHHHSTTSSSHHHHT  :    
ExpBur          :--ebebebbeebbeebebebbbbebbeeebeeebeeeee:    
Contact         :                                    b                                                               


Input Residue Numbers for Focused Sites

ex) 2,15,123