[pdbjlvh2]Protein Model on 7nup_D_1_HB

Protein Model on 7nup_D_1_HB_1 (TEMPLATE: 7nup )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	D 1 (D)	polymer(polypeptide(L)) [884 aa]	Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2	b		HB 1 (D)	non-polymer(EDO)	1,2-ETHANEDIOL	251P 299L(K) 339P(S) (identity: 33.3 %/36.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7nup_D_1 identity=36.7%

queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
7nup_D_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :  SSS  SSEEEEEEEEEEEEETTTTE-----EEEEEEEEEEESS  SEEEEE  S EEEEEEEE SSSTTTSSS EE EEEEEGGGTEEEEE S-S   :    
ExpBur          :eeeeebbeebebebbebbbebebeeee-----bebebebbbebeeebeebbbbbeebebeebbbebeebeebeeeebebeebebeebbbbbbebe-eebe:    

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
7nup_D_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :SS E--------EEEEEEEEEE BSSSSEEEEEEEE SSS EEEEEEEE TTTGGGGTS B  STT EEEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eeee--------bebbbebeeebeeebebbbbbebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebebebebeeebebbbbb-eeeeeeeeeeee:    
Contact         :                                                                                        b           

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
7nup_D_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SEEGGG  EEEE  EEEEEE SS  EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHT     SSEEEEEEESS SSSEE  TT:    
ExpBur          :bbb------bbeebebbbbbbbbbbbbbbeebebebeeebebbbbbbeebeebbe--bbbebbbebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    
Contact         :                                        b                                       b                   

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ******* * *        *     *   **    *   * * ** * * *:
7nup_D_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEGGGT   TTT  HHHHHHHHHHHHHHHHHHHBTTTEE SSGGGTHHHHHHHHHHHHHHHHHH GGG  TTTT-HHHHHHHHHHHHSTT   SS  :    
ExpBur          :bbbbbbebbbbeeebbbbebbbebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bebbbebbebbbbebbbebbee:    

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *                                  *  :
7nup_D_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXNAEVKE: 536
SecStr          : --- SHHHHHHHSSHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHHTTTEE  HHHHHHHHH  ----------------------------  HHHH:    
ExpBur          :b---eeeeebbbbbeebbebbbbbbbbbbeeeeeeebbebbbeebbeebeeebbebeebbebbbee----------------------------eeebee:    

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *  *     * ** **      **     *     * *  * *                     *       **  *    *** :
7nup_D_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHSS S EEEEEEEETTEEEEEEEE  SS  TTSHH---HHGGGTT     EEEEEETTT S EEEE  SSE-EEEE SS  S EEESGGG SSSE:    
ExpBur          :bbebbbebbbbbbbbbbeeeeebebebbbbbbeeeeeeee---beeebeeeebbbbbbbbbeeeeeeeeeebeeee-eebebeeeeebbbbbbbbebbbb:    

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *:
7nup_D_1     633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEETTTHHHHHHHHHHH GGGS HHHHHHHHHHHHHHHHTTSS HHHHHHHGGGGGG   HHHHHHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHTTHH:    
ExpBur          :bbbeeebbeebbebbeeebeebeebbbbbbbbbbbbbbbbeebebeebbebbebbeebebbbbbbbbbebbbebbebbeeeebeebbeebbebbbebbee:    

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
7nup_D_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HT  SSS- S HHHHHHHHHHHHHHHHTT HHHHHHHHHHHHHHHHTTT S   TTTHHHHH--HHHTTSHHHHHHHHHHHTT S HHHHHHH:    
ExpBur          :bb-----eebebeb-eeebbebbbbeebbebbbebeeeebeeebeebbeebeeeeeeeebebbbbebbb--bebbeeeebbebbbeebeebebbbbbebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
7nup_D_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHHHT S HHHHHHHHHHHHH SSS GGGHHHHHHHHTTSHHHHHHHHHHHHHSHHHHHHHS TTSHHHHHHHHHHHTT   HHHHHHHHHHHHHHHHH:    
ExpBur          :bbbbbbbeeeebbeebbebbbeeeebbbbbbbebbebbbebeebbebbbebbeeebeebeeebebbbebbbebbebbbbbbbbeeebeebeebbeebeee:    

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
                :  **        **    ****   *      *   *  :
7nup_D_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr          :--T   THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :--ebebebbeebbebbebbbbbbeebbebbeebbeebee:

Protein Model on 7nup_D_1_HB_1 (TEMPLATE: 7nup )

Input Residue Numbers for Focused Sites