[pdbjlvh2]Protein Model on 7nsk_B_1_K

Protein Model on 7nsk_B_1_K_1 (TEMPLATE: 7nsk )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(AMPN_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [877 aa]	Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN
2	b		K 1 (K)	branched(oligosaccharide)	2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose	450A(N) 547M(K) (identity: 0.0 %/36.8 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7nsk_B_1 identity=36.8%

queryA        71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
                :*   ***    *  *     * **  *     *  *         **  ** *** *   * **      *    *        *      *  * * * :
7nsk_B_1      64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr          :  SSS  SSEEEEEEEEEEEEETTTTE-----EEEEEEEEEEESS  SEEEEE  S EEEEEEEE SSSGGG TT EE  EEEETTTTEEEEE S-S   :    
ExpBur          :eeeeebbebbebebbebebebebeeee-----bebebebebebeeeeebbbbbbeebebeebebebeebeebeeeebebeebebeebbbbbbebe-eebe:    

queryA       164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
                : ***        *     *   * *   *** * *   *      * *      **  *******  ** * *         ***** **     *    :
7nsk_B_1     158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr          :TTEE--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTT GGGTS B  STTS BEEEEEEEE TT EEEESS- EEEEEE TTS :    
ExpBur          :eeee--------bebebebeeebeebbbbbbebebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebbbbbebeeebebbbbb-beeeeeeeeeee:    

queryA       260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
                : **       * ** ****** * **  *       * **   * * *      *  ***      * *     *  *** * * *  ***  *******:
7nsk_B_1     249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr          :EEE------EE    SB GGG  EEEE  EEEEEE TTS EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHTT   SSSEEEEEEESS  SSEE  TT:    
ExpBur          :bbb------ebeebeebbbbbbbbbbbbbeebebebeeebebbbbbbeebeebbe--bbbebbeebbebbbebbebebebebbbbbbbbbbbeebbbbbb:    

queryA       359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
                :* **** ******  ** * *  *  **************** ***** ******* * *        *     *   **    *   * * ** * * *:
7nsk_B_1     341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr          :EEEEEGGGT   TTT  HHHHHHHHHHHHHHHHHTTBTTTBEESSGGGTHHHHHHHHHHHHHHHHTT GGG HHHHH-HHHHHHHHHHHTSTT   SS  :    
ExpBur          :bbbbbbbbbbbeeebbbeeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeebbeebebeeeb-bebbbebbeebbbebbbbbbee:    
Contact         :                                                                                           b        

queryA       459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
                :*    ** ** * **  ** ***  * **  ** *  *  *   **  * * *     **  *                                  *  :
7nsk_B_1     440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSCXXXXXXXXXXXXXXXXXXXXXXXXXXXNAEVKE: 536
SecStr          : --- SHHHHHHTSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSEE HHHHHHHHH   --------------------------- THHHH:    
ExpBur          :b---eeeeebbbbbbebbebbbbbbbbbbeeeeeeebbeebbbebbeebeeebbebebbbbbbeebe---------------------------eeebee:    

queryA       539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
                : *  **** * *   *  *     * ** **      **     *     * *  * *                     *       **  *    *** :
7nsk_B_1     537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr          :HHHHHHSS   EEEEEEEETTEEEEEEEE  SS  SSSTH---HHHS SS    EEEEEEESS SS EEEEE SSE-EEE  SS  S EEESGGG SSSE:    
ExpBur          :bbebbbeeebbbbbbbeeeeeebebebbbbbbebbeeeee---beeeeeeeebbbbbbebbbeeeeeeeebbeeee-eeeeeeeeeebbbbbbebebbbb:    
Contact         :        b                                                                                           

queryA       632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
                :* *    *    ***   *       *   * * * *  *       **  *  *  *         ** *  *  * **   *      * **     *:
7nsk_B_1     633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr          :EEE TTHHHHHHHHHHH GGGS HHHHHHHHHHHHHHHHTTSS SHHHHTTSTTGGG  SHHHHHHHHHHHHHHHHHHHHSS  HHHHHHHHHHHHTTHH:    
ExpBur          :bbbeeeebeebbebbeeebeebeeebbbbbbbbbbbbbbbeeeebebbeebbebbeebeebbbbebbbebbeebbeebebeeeeeebeebeeebeebbee:    

queryA       729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
                :           *        *          **      *      ** ****      *       **           *    **        *  * :
7nsk_B_1     733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr          :HH-----HT  SSS- S HHHHHHHHHHHHHHHSSS HHHHHHHHHHHHHHHH TT     TTTHHHHH--HHHTTSTTHHHHHHHHHHH S HHHHHHH:    
ExpBur          :bb-----eebeeee-eeeebebbbbeebbbbbbebeeeebeeebeeebebbeeeeeeeebbbbbbebbb--bbbbeeeebbeebbeebeebebbbbbebb:    

queryA       829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
                :  **  **    *            *  *        *     ** * ****  **  *      **      *   *  **    **    *    *  :
7nsk_B_1     825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr          :HHHHHT S HHHHHHHHHHHHH SSS GGGHHHHHHHHHHSTTSHHHHHHHHHHSHHHHHHHS TT HHHHHHHHHHHSS  STTTHHHHHHHHHHHHHT:    
ExpBur          :bebbbbbeeeeebeebbeebbebeebbbbbbbebbebbbeeeebbeebbebbeeebeebeeebebbbebbbebbebbbebbbbeeebeebeebbeebeee:    

queryA       929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWF: 962
                :  **        **    ****   *      * :
7nsk_B_1     925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWL: 956
SecStr          :--T   HHHHHHHHHHHHHHHHTTS      TTT:    
ExpBur          :--ebebebbebbbeebebebeeeeeeeeeeeeee:

Protein Model on 7nsk_B_1_K_1 (TEMPLATE: 7nsk )

Input Residue Numbers for Focused Sites