Protein Model on 5j6s_B_1_F_1
(TEMPLATE: 
5j6s
)Protein Model on 5j6s_B_1_F_1
(TEMPLATE: 5j6s
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(AMPN_HUMAN) | B 1 (B) | polymer(polypeptide(L)) [880 aa] | Endoplasmic reticulum aminopeptidase 2 :ERAP2_HUMAN | |
| 2 | b | F 1 (F) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 90R(H) 91P 92Y(N) 239H(R) 240P(E) (identity: 20.0 %/36.7 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5j6s_B_1 identity=36.7% |
queryA 71:WNRYRLPNTLKPDSYRVTLRPYLTPNDRGLYVFKGSSTVRFTCKEATDVIIIHSKKL---NYTLS--QGHRVVLRG--VGGSQPPDIDKTELVEPTEYLV: 163
:* *** * * * ** * * * ** ** *** * * ** * * * * * * * :
5j6s_B_1 64:WQELRLPSVVIPLHYDLFVHPNLTSLD-----FVASEKIEVLVSNATQFIILHSKDLEITNATLQSEEDSRYMKPGKELKVLSYPAHEQIALLVP-EKLT: 157
SecStr : SSS TTEEEEEEEEEEEEETTTTE-----EEEEEEEEEEE S SSEEEE SS EEEEE EESS GGG TT EEEEETTTTEEEEE S-S :
ExpBur :eeeeebbebbebebbebbbbbebeeee-----bebbbebbbebeeebebbbbbbeebeeeebebebeebeebeeebeebeebebeebbbbbbebe-eebe:
Contact : bbb
queryA 164:VHLKGSLVKDSQYEMDSEFEGELADDLAGFYRSEYME-GNVRKVVATTQMQAADARKSFPCFDEPAMKAEFNITLIHPKDLTALSNMLPKGPSTPLP---: 259
: *** * * * * *** * * * * * ** ******* ** * * ***** ** * :
5j6s_B_1 158:PHLK--------YYVAMDFQAKLGDGFEGFYKSTYRTLGGETRILAVTDFEPTQARMAFPCFDEPLFKANFSIKIRRESRHIALSNM-PKVKTIELEGGL: 248
SecStr :SS E--------EEEEEEEEEE BSSSSEEEEEEEE TTS EEEEEEEE TTTTGGGTS B SSSS BEEEEEEEE TT EEEESS- EEEEEE TTS :
ExpBur :eeee--------bebbbebeeebeeebbbbbebebebeeeeeeebbbbbbbbbbbbbbbbbbbbbebbbebbbebebeeebebbbbb-beeeeeebeeee:
Contact : bb b b
queryA 260:-EDPNWNVTEFHTTPKMSTYLLAFIVSEFDYVEKQASNGVLIRIWARPSAIAAGHGDYALNVTGPILNFFAGHYDTPYPLPKSDQIGLPDFNAGAMENWG: 358
: ** * ** ****** * ** * * ** * * * * *** * * * *** * * * *** *******:
5j6s_B_1 249:LED------HFETTVKMSTYLVAYIVCDFHSLSGFTSSGVKVSIYASPDKRNQTH--YALQASLKLLDFYEKYFDIYYPLSKLDLIAIPDFAPGAMENWG: 340
SecStr :EEE------EE SB GGG EEEE EEEEEE TT EEEEEE GGGGGGGH--HHHHHHHHHHHHHHHHHT SSEEEEEE SS SSSEE TT:
ExpBur :bbb------bbeebeebbbbbbbbbbbbbeeeebebeeebebbbbbbbebeebbe--bbbebbbebbebbbebbebebebebbbbbbbbbbeeebbbbbb:
queryA 359:LVTYRENSLLFDPLSSSSSNKERVVTVIAHELAHQWFGNLVTIEWWNDLWLNEGFASYVEYLGADYAEPTWNLKDLMVLNDVYRVMAVDALASSHPLSTP: 458
:* **** ****** ** * * * **************** ***** ******* * * * * ** * * * ** * * *:
5j6s_B_1 341:LITYRETSLLFDPKTSSASDKLWVTRVIAHELAHQWFGNLVTMEWWNDIWLNEGFAKYMELIAVNATYPELQFDDYF-LNVCFEVITKDSLNSSRPISKP: 439
SecStr :EEEE GGGT TTT HHHHHHHHHHHHHHHGGGTBTTTEEESSGGGTHHHHHHHHHHHHHHHHHH GGG GGGTT-HHHHHHHHHHHSSSS S :
ExpBur :bbbbbbebbbbeeebbbbeeebebbbbbbbbbbbbbbbbbbbbebbebbbbbbbbbbbbbbbbbeeebeebebeeeb-bebbbebbebbbbebbbbbbee:
queryA 459:ASEINTPAQISELFDAISYSKGASVLRMLSSFLSEDVFKQGLASYLHTFAYQNTIYLNLWDHLQEAVNNRSIQLPTT--------------------VRD: 538
:* ** ** * ** ** *** * ** ** * * * ** * * * ** * * :
5j6s_B_1 440:A---ETPTQIQEMFDEVSYNKGACILNMLKDFLGEEKFQKGIIQYLKKFSYRNAKNDDLWSSLSNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEVKE: 536
SecStr : --- SHHHHHHTSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTEEE HHHHHHHTT ------------------------------ :
ExpBur :b---eeeeebbbbbbebbebbbbbbbbbbeeeeeeeebeebbbebbeebeeebbebebbbebbeee------------------------------eeee:
queryA 539:IMNRWTLQMGFPVITV--DTSTGTLSQEHFLL-----DPDSNVTRPSEFNYVWIVPITSIRDGRQQQDYWLIDVRAQNDLFSTSGNEWVLLNLNVTGYYR: 631
: * **** * * * * * ** ** ** * * * * * * ** * *** :
5j6s_B_1 537:MMTTWTLQKGIPLLVVKQDGCSLRLQQERFLQGVFQEDPE---WRALQERYLWHIPLTYSTSSSNVIHRHILKSKT-DTLDLPEKTSWVKFNVDSNGYYI: 632
SecStr : HHHHHS S EEEEEEBSSS B EEEEE SS TTSHH---HHHHGGG B TT B SSE-E SS S SSTT SS E:
ExpBur :bbeebbebebbbbbbbeeeeeebebebbbbbbbbeeeeee---beebeeeeebbbbbbbbbeebeeeeeeebeeee-eeeebeeeeebbbbbbebebbbb:
queryA 632:VNYDEENWRKIQTQLQRDHSAIPVINRAQIINDAFNLASAHKVPVTLALNNTLFLIEERQYMPWEAALSSLSYFKLMFDR---SEVYGPMKNYLKKQVTP: 728
:* * * *** * * * * * * * ** * * * ** * * * ** * * ** *:
5j6s_B_1 633:VHYEGHGWDQLITQLNQNHTLLRPKDRVGLIHDVFQLVGAGRLTLDKALDMTYYLQHETSSPALLEGLSYLESFYHMMDRRNISDISENLKRYLLQYFKP: 732
SecStr :EEEETTHHHHHHHHTTSSGGGS HHHHHHHHHHHHHHHHHTSS HHHHHHHTTGGGT HHHHHHHHHHHHHHHHHHHHS HHHHHHHHHHHHHTTHH:
ExpBur :bbbeeebbeebbebbeeebeebeebbbbbbbbbbbbbbbbebbebeebbebbbbbeebeebbbbebbbebbbebbebbebeebeebbebbeebbeebbee:
queryA 729:LFIHFRNNTNNWREIPENLMDQYSEVNAISTACSNGVPECEEMVSGLFKQWMENPNNNPIHPNLRSTVYCNAIAQGGEEEWDFAWEQFRNATLVNEADKL: 828
: * * ** * ** **** * ** * ** * * :
5j6s_B_1 733:VI-----DRQSWSD-KGSVWDRMLRSALLKLACDLNHAPCIQKAAELFSQWMESSGKLNIPTDVLKIVY--SVGAQTTAGWNYLLEQYELSMSSAEQNKI: 824
SecStr :HH-----TS SSS- S HHHHHHHHHHHHHTTTTT HHHHHHHHHHHHHHHTTTT S STTHHHHH--HHTTSSHHHHHHHHHHHHH HHHHHHH:
ExpBur :bb-----eebeebe-eeebbebbbbbebbebbbebeeeebeeebeebbeebeeeebeeebbbbbbebbb--bbbbeeeebbeebbeebeebbbbbbbebb:
queryA 829:RAALACSKELWILNRYLSYTLNPDLIRKQDATSTIISITNNVIGQGLVWDFVQSNWKKLFNDYGGGSFSFSNLIQAVTRRFSTEYELQQLEQFKKDNEET: 928
: ** ** * * * * ** * **** ** * ** * * ** ** * * :
5j6s_B_1 825:LYALSTSKHQEKLLKLIELGMEGKVIKTQNLAALLHAIARRPKGQQLAWDFVRENWTHLLKKFDLGSYDIRMIISGTTAHFSSKDKLQEVKLFFESLEAQ: 924
SecStr :HHHHTT TTHHHHHHHHTTTTSSS GGGHHHHHHHHHTSSTTHHHHHHHHHTTHHHHHHHS TT HHHHHHHHTTTSS SHHHHHHHHHHHHHHTTT:
ExpBur :bebbbbbeeeebbeebbebbbeeeebebbbbbebbebbbeeeebbebbbebbeeebeebeeebebbbebbbbbbebbbebbbbeebbeebeebbeebeee:
queryA 929:GFGSGTRALEQALEKTKANIKWVKENKEVVLQWFTENSK: 967
: ** ** **** * * * :
5j6s_B_1 925:--GSHLDIFQTVLETITKNIKWLEKNLPTLRTWLMVNTR: 961
SecStr :--T THHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS:
ExpBur :--ebebebbebbbebbebbbebbeebbeebeebbeebee:
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[assembly_id:2]
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