Protein Model on 8vkm_D_1_W_1 (TEMPLATE: 8vkm )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ACE2_HUMAN) D 1 (D) polymer(polypeptide(L)) [593 aa] Angiotensin-converting enzyme 2 :ACE2_MOUSE
2 b W 1 (W) branched(oligosaccharide) 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose 53N 55T 57E 58N 340Q(R) (identity: 80.0 %/84.4 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:8vkm_D_1 identity=84.4%
queryA        22:EEQAKTFLDKFNHEAEDLFYQSSLASWNYNTNITEENVQNMNNAGDKWSAFLKEQSTLAQMYPLQEIQNLTVKLQLQALQQNGSSVLSEDKSKRLNTILN: 121
                :** *****  ** ***** ****************** * *  *  *****  ***  **   *****    * ******* *** ** ** * ******:
8vkm_D_1      22:EENAKTFLNNFNQEAEDLSYQSSLASWNYNTNITEENAQKMSEAAAKWSAFYEEQSKTAQSFSLQEIQTPIIKRQLQALQQSGSSALSADKNKQLNTILN: 121
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS  HHHHHHHHHHHHHHHHHHHHHHHHHTTS GGG   HHHHHHHHHHT  GGGGS HHHHHHHHHHHH:    
ExpBur          :beebeebbeebbeebbeebeebbebbbeebbeebeebeeeeeebeeeeeebeeebbeebeebebeebeeeebebbbeebbebbeeebeeeeeeebeebbe:    
Contact         :                               b b bb                                                               

queryA       122:TMSTIYSTGKVCNPDNPQECLLLEPGLNEIMANSLDYNERLWAWESWRSEVGKQLRPLYEEYVVLKNEMARANHYEDYGDYWRGDYEVNGVDGYDYSRGQ: 221
                :************** ************ **** * *** ****** ** ************************ * ***********  * *** * * *:
8vkm_D_1     122:TMSTIYSTGKVCNPKNPQECLLLEPGLDEIMATSTDYNSRLWAWEGWRAEVGKQLRPLYEEYVVLKNEMARANNYNDYGDYWRGDYEAEGADGYNYNRNQ: 221
SecStr          :HHHHHHHT EEE TT TT EEETTTTHHHHHHH   HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT SSHHHHHHGGG B  STT  B HHH:    
ExpBur          :ebeeebeebebbeeeeeeeeeebeeebeebbeeeeebeebeebbbbbbbebbeebbeebeebbebbbebbeebebebbbbebbbebebeeeeeeebebee:    

queryA       222:LIEDVEHTFEEIKPLYEHLHAYVRAKLMNAYPSYISPIGCLPAHLLGDMWGRFWTNLYSLTVPFGQKPNIDVTDAMVDQAWDAQRIFKEAEKFFVSVGLP: 321
                :****** ** ************** ***  ******* ******************** ***** ***********  * *** *** ************:
8vkm_D_1     222:LIEDVERTFAEIKPLYEHLHAYVRRKLMDTYPSYISPTGCLPAHLLGDMWGRFWTNLYPLTVPFAQKPNIDVTDAMMNQGWDAERIFQEAEKFFVSVGLP: 321
SecStr          :HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTS SSS EEGGGSSSSSSS  GGGTTTT S SSS     HHHHHHTT  HHHHHHHHHHHHHHHT  :    
ExpBur          :bbebbeebbeebeebbebbbbbbbeebeeebeeebbeebbbbbbbbbbbbbbebeebbeebbbeeeeeebebeebbeeeebebeebbebbbebbeebebe:    

queryA       322:NMTQGFWENSMLTDPGNVQKAVCHPTAWDLGKGDFRILMCTKVTMDDFLTAHHEMGHIQYDMAYAAQPFLLRNGANEGFHEAVGEIMSLSAATPKHLKSI: 421
                : ****** ***** *    * ********** ***** ******** ****************** **********************************:
8vkm_D_1     322:HMTQGFWANSMLTEPADGRKVVCHPTAWDLGHGDFRIKMCTKVTMDNFLTAHHEMGHIQYDMAYARQPFLLRNGANEGFHEAVGEIMSLSAATPKHLKSI: 421
SecStr          :   HHHHHH B S   SS     S EEEEEETTEEEEE    SSHHHHHHHHHHHHHHHHHHHGGGS GGG S SSHHHHHHHHHHHHHHHTSHHHHHHT:    
ExpBur          :ebeeebeeebbbeeeeeeeebeeeeeebebbeebbbbbbbbeeebebbbebbbbbbbbbbbbbbeebebbbbebbbbbbeebbbebbbbbbbbbebbeee:    
Contact         :                  b                                                                                 

queryA       422:GLLSPDFQEDNETEINFLLKQALTIVGTLPFTYMLEKWRWMVFKGEIPKDQWMKKWWEMKREIVGVVEPVPHDETYCDPASLFHVSNDYSFIRYYTRTLY: 521
                :***  ***** ******************************** ***** ******************* **************************** *:
8vkm_D_1     422:GLLPSDFQEDSETEINFLLKQALTIVGTLPFTYMLEKWRWMVFRGEIPKEQWMKKWWEMKREIVGVVEPLPHDETYCDPASLFHVSNDYSFIRYYTRTIY: 521
SecStr          :TSS TT    HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHT S GGGHHHHHHHHHHHTT EE SS   TT  SGGGSHHHHTT   HHHHHHHHH:    
ExpBur          :ebbeeeeeeeeebbbbbbbebbbebbbbbbbbbbbbebbbbbbeeebeeeebbeebbebbbebbbbbbbeebeeebbbbbbbebbbbeebbbebbbbbbb:    

queryA       522:QFQFQEALCQAAKHEGPLHKCDISNSTEAGQKLFNMLRLGKSEPWTLALENVVGAKNMNVRPLLNYFEPLFTWLKDQNKNSFVGWSTDWSP: 612
                :*************  * ****************  ** ** ***** ******** ** * ****** *** *** ** ****** * ***:
8vkm_D_1     522:QFQFQEALCQAAKYNGSLHKCDISNSTEAGQKLLKMLSLGNSEPWTKALENVVGARNMDVKPLLNYFQPLFDWLKEQNRNSFVGWNTEWSP: 612
SecStr          :HHHHHHHHHHHTT  S GGG   TT HHHHHHHHHHHHHTTSS HHHHHHHHHS SS   HHHHHHTHHHHHHHHHHTSSS  S  SS   :    
ExpBur          :bbbbbebbbeebeeeeebbebbbbebeebbeebeebbebbbbebbbebbeebeeeeebebebbeebbeebbebbeeebeeeeebbeeeebe:

Input Residue Numbers for Focused Sites

ex) 2,15,123