[pdbjlvh2]Protein Model on 7lqv_B_1_G

#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein. [pdbjlvh2]Protein Model on 7lqv_B_1_G_1

Protein Model on 7lqv_B_1_G_1 (TEMPLATE: 7lqv )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(queryA)	B 1 (B)	polymer(polypeptide(L)) [1112 aa]	Spike glycoprotein :SPIKE_SARS2
2	b		G 1 (X)	polymer(polypeptide(L)) [104 aa]	4-8 Light chain	146H 147K 246R 247S 248Y 249L 250T 251P (identity: 100.0 %/97.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:7lqv_B_1 identity=97.9%

queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :****************************************************************************************************:
7lqv_B_1      33:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 132
SecStr          :       S   S  EEEE S      SS    SEEEEEEEEE  TTEEEE   SEE  SSS   EE    EE TT EEEE   SS  EEEEEEESS SSS:    
ExpBur          :eebebeeeeeeeebebebeebbbbeeeeeebeeeeeebeebbbbbeeebbebebbeeeeeeeeeebbbbebebeebbbbbbbbeeebbbbbbbbbebeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************        ****************************:
7lqv_B_1     133:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMXXXXXXXXFKNLREFVFKNIDGYFKIYSKHTPINLV: 232
SecStr          :S EEEEEE SS EEEEEE     SS  EEEE TTTTSSS EEE  S S  TTEEEEE  S S  --------   EEEEEEEEETTEEEEEEEEE  S  :    
ExpBur          :ebbbbbbbeeeebbbebbbbebbebbbbbbeeeeeeeeebeeeebbbeeeeeeeeeeeeebbbe--------ebebbbbbbbbeeeebebbbeebebeee:    
Contact         :                                bb                                                                  

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :****************************************************************************************************:
7lqv_B_1     233:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 332
SecStr          :SSS SS    EEEEEE      SEEEEEEEEB S   SS      B S    EEEE EEEEEEEEE TTS EEEEEETTTSTTHHHHHHHT SS  SEEE:    
ExpBur          :eebbeeebbbeeebebebebebeebbbbbbbebeeeeeeeeebbbebeebebbbbebeebebbbebbeebebeebbbbbbbbbbebbbeeeebebeebee:    
Contact         :                                bbbbbb                                                              

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7lqv_B_1     333:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 432
SecStr          :EEEEEE     B  B          SSSS       SSS       S     HHHHS SSEEEEEESSS SS  SSS B S         TT SSS  SS:    
ExpBur          :ebeebebeeeeebbbbeeeeeeeeeeeeeeeeeebbbeeeeeeebeebebebeeeeeeeeeeeeebeeeeeeebeeebebeeeebbbbbeeebeeebeee:    

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :*******************************  *******************************************************************:
7lqv_B_1     433:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKXXGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 532
SecStr          :  STTTTTTT   TT   EEEEE  SSSS  --  TT       SS   TTS         SSS    S   SS S         TT  TT      B  :    
ExpBur          :eeeeebebbbebeeeeeeeeebbeeeeebee--eeeebebbeeeeeebebeeeeeeebeeeeeeeebeeeeeeebeeeeeeeeeeeeeeeeeeebebbee:    

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7lqv_B_1     533:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 632
SecStr          :      SS  B           SSEEEEEETTEEEEEEEEE S    TT  B   TTS   EEE SSS  EEEEE  SEEEEEEEES TTT    EEEEE:    
ExpBur          :beeeeeeeeebbbeeeeeeeeeeebbebebeeeeeebbbeebeeeeeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbbe:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :***************************************************************            *************************:
7lqv_B_1     633:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 732
SecStr          :T  STTHHHHTTTTTS THHHHTTSSS EEEETTEEEESSEE S     SEEEETTEEEEEE ------------  EEEEEE   S       BTTEEE:    
ExpBur          :ebebebbeebbebeeebeebeeebeeeeeeebebbbbbebeebeeeeeeebebeeebbbbeee------------eebbbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7lqv_B_1     733:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 832
SecStr          :  S EEEEEEEEEEE    EEEE HHHHHHTT HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  STT   TTTSB TTSSS:    
ExpBur          :bbeebebebeeebbbbbbbbbebebebbbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeebeeeeeeebeebebeebbbeeeeeb:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :****************************************************************************************************:
7lqv_B_1     833:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 932
SecStr          :  BHHHHHHHHH   SS SHHHHHHHTTT  SSTT  HHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHHTTGGGGSS     HHHHHHHHHHHHT  H:    
ExpBur          :ebbebbbbbbebbeeeebebbeeeeebeeeeeeeeeebeeebebbbeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :************************************************************************  **************************:
7lqv_B_1     933:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1032
SecStr          :HHHHHTHHHHHHHHHHHHHHHHHHHHSS    HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebeeebeeeeeebeebbebbeebbebbeebeeebeeeeebeebebeebeeebeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7lqv_B_1    1033:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1132
SecStr          :HHHHHHHHHHHHHHHHHHTTTS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEE    EEEE S EESSSEEEEESSSEEEESSS EEEE SSS   E:    
ExpBur          :bbeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeebeeeebebbebbbeeeebbeeeebbbbbeeeebebbbebbbeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147
                :**********************************:
7lqv_B_1    1133:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1166
SecStr          :E BGGGEEEEEETTS SS EE   B SSSSS   :    
ExpBur          :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee:

Protein Model on 7lqv_B_1_G_1 (TEMPLATE: 7lqv )

Input Residue Numbers for Focused Sites