#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | H 1 (K) | polymer(polypeptide(L)) [1061 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | E 1 (F) | polymer(polypeptide(L)) [213 aa] | The light chain of 3C1 fab | 369Y 374F 375S 376T 377F 378K 379C 380Y 381G 382V 383S 384P 385T 407V 408R 410I 411A 412P 414Q (identity: 100.0 %/93.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7dcc_H_1 identity=93.4% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7dcc_H_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : S EEE SS SS S EEEEEEEE TT EEEE EE ------- B EE TT EEEEEEESSS EEEEESSSSSS: ExpBur :eeeebeeeeebeeeebebebbbbbeeeeeeeeeebeeeeeebbbbeeebbebbbee-------eebbbeebebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7dcc_H_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE EEEEEEEEE SSS TT B EEES S EEE SS EEEEEEE EETTEEEEEE EEE S: ExpBur :eebbbbbbebeeeebbbbebebbebbbbbbeebeeeeeeebeeeebeeeeeeeeeeeebeeeeeebeeeeeebeebebbbbbeeebebbbbeeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7dcc_H_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEEEE EEEE EEEE ------- B EEEEEEEE EEEEEEEEE SS EEEEEETTT HHHHHHHHHT S SEEE: ExpBur :eebeeeebbbeeeeebeeebebeebbbbbbbbee-------eeebebeebbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7dcc_H_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEE SEEE SS S B HHHHS S STT EEE SSB THHHHTTS SEEEE SS HHHHHTS SEEEEEEEEE TTSGGG SSS: ExpBur :ebeebebeeeeebbbbeeeeeebeeeebbeeeebebbbebeeeebbebbbebeebeeeeeeeebebeeeeeeebeeeebbbbbbbbbbbebebbebbbee: Contact : b bbbbbbbbbbbb bb bbb queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7dcc_H_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : HHHHTTT TT EEEEEE TTTS TT EEE SS TT EE SSS TTS BTTEE SEEE TTS STTS EEEEEE: ExpBur :eeeebbbebbbbbeebebbbbbbebeeebbeeebbeebebbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb: Contact :b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7dcc_H_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE SS SS SS SS EEEEE SS EEEEEEEE SS EEE TTS EEEEE SSS EEEEE S EEEEEEE TTT EEEES: ExpBur :bbeeeeeeeebbeeeeeeeeeeeebbebbbeeeeeebbbeebeeeeeeeeeebeeeeeebebbbbeeeeebbebeebbeebbbbbbbeeeebeeebebee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7dcc_H_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :S SS -------------------- EEE SS EEES EE SS B EE SSSEEEEEE ------------ EEEEEE B S TT EE: ExpBur :ebeeeee--------------------eeeebeebbbeebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :************************************************************************************************** *: 7dcc_H_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKXS: 813 SecStr :E EEEEEEEEEEE EEE HHHHHSTT SHHHHTTGGG SHHHHHHHHHHHHHHHHHHHHHTTT SS S STT TTTTS BTT - : ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebeebbeebbeebeeebeeeeeeebeebebebbbbeeee-e: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7dcc_H_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : B HHHHHHHTT -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHSTTHHHHSS HHHHHHHHHHTTT T: ExpBur :eebebbeebbeeee--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebeebbbebbebbebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 7dcc_H_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHH HHHHHHHHHHHHHHHHHHHHH SSTTHHHHHHHHHHHHHHHHHHHGGGS TTSS S HHHHHTTS TTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :bbbeeeeeebbeebeebbeebeeebeeeeeebeebbebeeebeebbeebeeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7dcc_H_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTSS TTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEE BS EESSSSEEEESSSEEEESSSSEEEE SSS B: ExpBur :ebeebeebbeebbebbeebbbbebeeeebbeeeebbbbbbbbbeebbbbbbbbbeeeeeeebebbebbbeeeebbeeeeebbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7dcc_H_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr : BGGGEEE S TTTSTT EE B THHHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee: |