#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [1070 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | G 1 (L) | polymer(polypeptide(L)) [108 aa] | Fab P17 light chain | 375S 376T 377F 408R 503V 508Y (identity: 100.0 %/94.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7cwl_B_1 identity=94.4% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :************************* **********************************************************************: 7cwl_B_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYXXXXXRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : S S EEEEESS EE ----- S EEEEEEEE SSEEEEEEEESEE SSS EE EE S EEEEE SS EEEEE SSSSTT: ExpBur :eeeeeeeeeeeeeeebebebbbbbe-----eeeeeeeeeebbbbbeeebbbbbbbeeeeeeeeeebebeebebeebbbbbbebeeebbbbbbbbeeeeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7cwl_B_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEE TTTS EEEEEEEEE SS EEEEE SSTT EEEE TTTEEEEEEEEEEEE S SS SSSS TTEEEEEEEE SSEEEEEEEEE SS: ExpBur :bbbbbbbbeeeebebebbebbbbebbbbbbeeeeeeeeeebbeeebbeeeeeeeeeeeeeebbeeeeeeebeeebbbbbbbbbeeeebbbbbeeeebeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :************************************** **********************************************************: 7cwl_B_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPXXXXSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S EEEEEEEEE S SEEEEEEEE S ---- S EEEEEEE EEEEEEEEE TTSSEEEEEEGGG HHHHHHHHHT SS SEEE: ExpBur :eebeeeebbbeeebebebeeebeebbbbbbbeeeeeee----eeeeeeebbbbbbebeeeebbbebeeebebeebbbbeeeeebebbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************** *******************************************************************************: 7cwl_B_1 314:QTSNFRVQPTESIVRFPNXXXLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE EEEE --- HHHHTT S STT EEEEE SB HHHHHHH SEEE SS TTGGGTS BS EEEEEEEE TTGGGT STT: ExpBur :ebeebebeeeeebebeee---ebebeebbeeeebebbeebeeeebeebebebeebeeeeeeeeeebeeeeeeebeeeebbbbebbbbbbebebbeebbee: Contact : bbb b queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7cwl_B_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT SS EEEE B TTTSS TT B EEE SS TT EESSSS TTS SSEE SEEE B TTS GGG EEEEEE: ExpBur :eebebbbbbbbbbeebebbbbbbebbeebbeeebbeebebbeeeeeebeebeebeeeebbeeeeeebeeeeeeebeebbeebebbeeeeeeebbbbbbbb: Contact : b b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7cwl_B_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E SS B SSSEEEEEETTEEEEEEEEE TT B TTS EEE SSS EEEEE EEEEEEEES TTT S EEEEE: ExpBur :bbbeeeeeeebeeeeeeeebbeeebbebbbeebeeebbbbebeeebeeeeeebeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeebbbbee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7cwl_B_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T TT -------------------- EEE SSEEEES EE S B SEEEETTEEE S ------------ EEEE B S SSEEE: ExpBur :ebeeeee--------------------eeeebeebbbeebeebeeeeeeebebeeebbbbeee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7cwl_B_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EES EEEEEEEEEEE EEE HHHHHSSS HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS SSS TTTS TTSSS: ExpBur :bbbebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbbebeeebeeeeeeebeebebeebbeeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ******************************************************************: 7cwl_B_1 814:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHH -------------------- TTTHHHHTTEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS HHHHHHHHHHHHT T: ExpBur :eebebbbbbbeebe--------------------eeeeebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7cwl_B_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHHHHHHHHHHHHHHHHHHHHHHT SSTTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebbeebeeeeeebeebeebbeebeebbeebeeebeeeeebebeebeebbeebeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7cwl_B_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTTS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEEESSSEEEESSSSEEEE SSS E: ExpBur :bbeebeebbeebbebbeebbbeebeeeebbeeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbebeebebbbeeeebbbbbebbbeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7cwl_B_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 SecStr :E BGGGEEEES TTTSTT EE B SHHHHH : ExpBur :ebbeeebeeeeebeeeeebeeeebeeeeeeeeee: |