#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | A 1 (A) | polymer(polypeptide(L)) [1060 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | F 1 (F) | polymer(polypeptide(L)) [118 aa] | Nanobody Ty1 | 378K (identity: 100.0 %/93.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zxn_A_1 identity=93.4% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* **************************************: 6zxn_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEE S B SSS S EEEEEEEE TTEEEEEEEE ----- EE SS EEEEEEESS EEEEEEESSSSSS: ExpBur :ebbebeeeeeeeeeebebeebbbbbbeeeeeeeeebebeeebbbbebebbbbbbeee-----ebbbbbeebebeebbbbbbbbebbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 6zxn_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEE SS EEEEEEETTTTEEEEEEEES S SEEEEEE SS EEEEEEEEEETTEEEEEEEEEE S: ExpBur :ebbbbbbebbebebbbbbbbebbebbbbbbeebeeeeeeeeebeebeeeeeeeeeeeebeeeebebeeeeeebeebbbbbbbeeeeebbbbbeeeeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** **************************************************************: 6zxn_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S BEEEEEE EEEEEEEEEE ---- TTTS B SEEEEEEE EEEEEEEEE SSS EEEEEETTS HHHHHHHHHTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbe----eeeeeebebbebbbbbbbbeeeebbbebeeeeebeebbbbeeeebbebbbeeeebebeebeb: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 6zxn_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EEEEEE S EEE B HHHHHT S STT EEEEE SSB HHHHHS S SEEEEESS SS GGG BSEEEEEEEEEEGGGSTT STT: ExpBur :ebeeeeeeeeeebebbeeeeeebebeebbebeebebbbbbeeeebbebbbbbeebeeeeebebeebeeeeeeebeeebbbbbebbbbbbebebeeebbee: Contact : b queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 6zxn_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : HHHHHT TT EEEEEEE HHHH TT BTT EEE SS TT EE SSS SS BTTEE SEEE B TT TTTSEEEEEEE: ExpBur :eeeebbbebbbbbeebebbbbbbebeeebbeeebeeebebbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbebbbbeeebeebeebbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :***** *********************************************************************************************: 6zxn_A_1 514:SFELLXXPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :EEE -- BB SS EEEEETTEEEEEEEEE TT EEEETTTEEEEEEETTTTEEEEEE EEEEEEEES TTT EEEEE: ExpBur :bbeee--eeebebbeeeeebebeebbebebeeeeeebebeeeeeebeeeeeeeeeeeeebebbbbbeeeeebebeebeebbbbbbbbbbeebeebbbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ********************************** ***********************: 6zxn_A_1 614:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYXXXXXXXXXXXXXXXXSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T TT -------------------- EEETTEEEES EE S SEEEETTEEEE ---------------- EEEE TT EE: ExpBur :ebebeee--------------------eebebebbbbeebeebeeeeebebebeeebbbbe----------------ebebbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 6zxn_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EEEEEEEEEEEEEEE EEEE HHHHHTSS HHHHHHHHHH SHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TT SS: ExpBur :bbeebebebeeebbbbbbbbbbbebeebbbeebeebeebbeeeeeebeebeebbeebbebbbebbeebbbbbeeeeeeeeeeebeebebeebbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :*************** ***********************************************************: 6zxn_A_1 814:KRSFIEDLLFNKVTLXXXXXXXXXXXXXXXXXXXXXXXXXXFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr :S HHHHHHHHTS -------------------------- SEEEE SS HHHHHHHHHHHHHHHHHHTTGGGSSS SHHHHHHHHHHHT H: ExpBur :ebbebbbbbbeebee--------------------------eebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :************************************************************************ **************************: 6zxn_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDPPEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHTSHHHHHHHHHHHHHHHHHHHHTS TTHHHHHHHHHHHHHHHHHHHHTT TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbebbeebbeebeeebeeeeeebeebeebbeebeebeeebeeebebeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 6zxn_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EEETTEEEEESSSEEEESSS EEEEBTTB : ExpBur :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbbbbbbbbbbbeeeeeeebebbebbbeeeebbebeebbbbbeeeebbbbbeebbbee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 :*********************************: 6zxn_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELD:1146 SecStr :B BSSSEEE S SSSSTT EE B TTHHHH : ExpBur :ebbeebbeeeeebeeeeeeeeeebeeeeeeeee: |