#WARNING:no index is registered index "YP_009724390.1" in "https://rest.uniprot.org/uniprotkb/" url "https://rest.uniprot.org/uniprotkb/YP_009724390.1.txt".
Please visit the UniProt website(https://www.uniprot.org), and get a proper ID/AC for your query protein.
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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(queryA) | B 1 (B) | polymer(polypeptide(L)) [1017 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | GA 1 (B) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 331N 580Q (identity: 100.0 %/91.4 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:6zox_B_1 identity=91.4% |
queryA 27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126 :******************************************* ***********************************************: 6zox_B_1 18:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXXXXDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 117 SecStr : EEE S B SSS SEEEEEEEEE TT EEEEE ---------- EEE S EEEEEEESS EEEEEEESS BSSS EEEEEE SSEE: ExpBur :eeeebebbbbbbeeeeeeeeeeeebebbbbbbeeebeeeebee----------ebeebebeebbbbbbbbbbbbbbbbbbbbebebeeebbbbbbbbeee: queryA 127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226 :***************** ********************************************************** ***********: 6zox_B_1 118:VIKVCEFQFCNDPFLGVXXXXXXXXXMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPIXXXXXLPQGFSALEPL: 217 SecStr :EEEEE BB SS EE --------- B SBS S EEEEEEE S S EEEEEEEEEETTEEEEEEEEEE ----- S BEEE: ExpBur :bbbbbebebeeebebbb---------eeeeeebbeeeeeeeeeeeeeeeeeeeeeeeeebeebbbbbbbeeeeebbbbbeeeee-----beeeebbbeee: queryA 227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326 :******************* ******************************************************************: 6zox_B_1 218:VDLPIGINITRFQTLLALHXXXXXXXXXXXXXXXGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 317 SecStr :EEE EEEEEEEE --------------- EEEEE EEEEEEEEE TTS EEEEEESSSSHHHHHHHHHTSS SEEEEEEEEE SSEE: ExpBur :eebebebebeebbbbbbee---------------bbbbbbbbebeeeebbbebbeebebbebbbbeeeebbebbbeeeebebeebebebeeeeeeeeeeb: queryA 327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426 :************************************************************************************** *************: 6zox_B_1 318:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPCQTGKIADYNYKLP: 417 SecStr :EE B HHHHT S BGGG EEEEE SEE HHHHHH TT SEEEEESS TTTTTT EEEEEEEEEEEEEGGGGGGSSSS STTTTTT : ExpBur :bbbeeeeeebebeebbebeebebbeebeeeebeebebebeebeeeeeeeeeebeebeeeebbeebbbbbbbbbbbbebebeebbbbeeeeebbbbbbbbe: Contact : b queryA 427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526 :****************************************************************************************************: 6zox_B_1 418:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 517 SecStr :SS EEEEEEE SSS TT EEE SS TT EESSS SSS BTTEE SEEE TTS TTTSEEEEEEEEEEESSS EE : ExpBur :eebebbbbbbebeeebbeeebbeebebbbeeeeebeeeeebeeeebbbeeeeeeeeeeeeebeebbeebbbeeeeeeeebbbbbbbbbbeebeeebebbb: queryA 527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626 :********************************************************************************************** : 6zox_B_1 518:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVXXXXXX: 617 SecStr :S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE EEEEEEEE TTT EEEEETS TT ------: ExpBur :eeeeeebeeeebbebbbbbeeeebbbeebeeebeeeebebeeeeeebebbbbbeeeebbebeebeebbbbbbbbbeeebeebbbbbeebeeeee------: Contact : b queryA 627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726 : ************************************ **************************************: 6zox_B_1 618:XXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 713 SecStr :-------------- EEEETTEEEESSEE SS B SEEEETTEEEEEE ------------ EEEEEEB S TTEEEEEEEEEEEEEEEE: ExpBur :--------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eebbbbbeebeeeeeeeeeeeeeeebbeebebebeeeb: queryA 727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826 :****************************************************************************************************: 6zox_B_1 714:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 813 SecStr :EE EEEE HHHHHSTT HHHHHHHGGGTTHHHHHHHHHHHHHHHHHHHHHHHH SS SS STT TTTS TTSSS HHHHHHHTT : ExpBur :bbbbbebbebebeebbbbebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeebebeeeeebeebebeebbeeeeeebebbebbbbbbebb: queryA 827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926 :* *************************************************************************: 6zox_B_1 814:TXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 913 SecStr : -------------------------- SSEEEE SS HHHHHHHHHHHHHHHHHHTTHHHHSS HHHHHHHHHHTTT THHHHHTHHHHHHH: ExpBur :e--------------------------eeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeebebbebbbebbeebebeeebbeeeeeebbeb: queryA 927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026 :************************************************************ ***************************************: 6zox_B_1 914:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKCEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1013 SecStr :HHHHHHHHHHHHHH GGGGHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :beebbeebbeebeeeeeebeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeebbeebeebbeebb: queryA 1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126 :****************************************************************************************************: 6zox_B_1 1014:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1113 SecStr :HHHHHHTSS STTTTSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSSEEEEESSSEEEESSS EEEE TTS EE BTTTEEEEEET: ExpBur :ebbeebbbebbeeeebbbeeebbbbbbbbbbebbbbbbbbbbeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeeeebbeebbeeeeee: queryA 1127:DVVIGIVNNTVYDP:1140 :**************: 6zox_B_1 1114:DVVIGIVNNTVYDP:1127 SecStr :TSSTT EE B : ExpBur :eeeeeeeeeebeee: |