[pdbjlvh2]Protein Model on 8tcg_A_1_B

Protein Model on 8tcg_A_1_B_1 (TEMPLATE: 8tcg )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [440 aa]	Integrin alpha-V heavy chain :ITAV_HUMAN
2	b		B 1 (B)	polymer(polypeptide(L)) [242 aa]	Integrin beta-6 :ITB6_HUMAN	403Y 406Y 426R 428Q(R) 429H(T) 457G(A) 459Y 462G(F) 483P 484L 486Y(M) 490R(E) 516Y(F) 520R 523E(S) 545L(Y) 583R(Y) (identity: 41.2 %/38.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8tcg_A_1 identity=38.4%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
8tcg_A_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSSEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSSEEEE SSSSSS EEE-EEETT EEE TTS EEE  EE:    
ExpBur          :ebbbbbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbebbbbbbbbebeebbbb-bbbbebeeebeeeeeebbbbb:    
Contact         :b  b                    b  bb                           b b  b                    bb b       b b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
8tcg_A_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S TTSEEEEEESTTSSSS EEEEEETT SGGG  EEEEE EETTEE SS SEEEE ------- S   SSS   TT:    
ExpBur          :bbbbbeeeeeeeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbebeeeebbbbbbbbbeeebbeeebebebeb-------ebeeeeeeebbbb:    
Contact         :                     b   b  b                     b                                          bb     

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRP: 614
                : *  *  *    *  *  ***      *    **:
8tcg_A_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARP: 440
SecStr          :SSEEEEE SS SSS EEEEEEGGGTEEEEEEE  :    
ExpBur          :ebbebebebeeeebbbbbbbbbbbbbbbbbebee:    
Contact         :b                    b

Protein Model on 8tcg_A_1_B_1 (TEMPLATE: 8tcg )

Input Residue Numbers for Focused Sites