Protein Model on 4mmy_A_1_B_1
(TEMPLATE: 
4mmy
)Protein Model on 4mmy_A_1_B_1
(TEMPLATE: 4mmy
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DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [924 aa] | Integrin alpha-V :ITAV_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [690 aa] | Integrin beta-3 :ITB3_HUMAN | 349L(F) 351S(Q) 354I(F) 368V(P) 373W 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 483P 484L 488E(R) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) 679G(K) 680H(L) 681R(K) 717C(E) 719Q(R) 720D 723S(T) 828S(D) 830R(I) 835L(R) 842P(R) 879M(R) 883L(H) (identity: 25.7 %/29.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:4mmy_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
:** * * * * * * * * * * * **** * ** *:
4mmy_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr :SS TTTTTTT TTSEEEE TTSEEEEEETTHHHHTBEEEEEEHHHHHHT TT SS TT EE GGGTT BTSEEEEE SSSSS EEEEEET:
ExpBur :eebebebbbebbbbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbebbbbbebeeeeebbbbbbbb:
Contact : b b b b b b b b
queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
:* * * * * * * *** * * ****** * * * * * * * :
4mmy_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr :TTTTTT EEEEE ----SSS EEEEEE SSTTS TTSEEEEE SSSSSS EEE-EEETT EEE TTS EEE EEEEEEE SSS EEEEEEE SSTT--:
ExpBur :ebeeebbbbbbbb----beebeeeeebebebeebebbbbbbebbbbeeeebbbb-bbbbebebebeeeeeeebbbbbbbbbeeebeeeeeebebeeee--:
Contact :b bb bb b b bb bbbbb b b b
queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
: *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** :
4mmy_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr : TTSEEEEEE SS SSS EEEEEETT SGGG EEEEE EETTEE SS SEEE ------- SSS EEEEEEEEE SS SSS EEEEEETTTT:
ExpBur :bebbbbbbebbbbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbbeeebbebeb-------eeeeeeeebbbbebbebeeebbebebbbbbbbbbbbb:
Contact : b b bbb b b
queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
: * *** * ** * * * * * * ** ** ** * * :
4mmy_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr :EEEEEEE EEEEEEEEEEESSEE TT SSS EEEEEEEEEEEEESSS S----- B EEEEES TT SSS EEETTT SSEEEEE :
ExpBur :ebbbbbbbbbbebeeebebeeeebebeeeeeeebeeeeebbbbebebbbebebeeebee-----ebebbbebbbbeeebeeeeebbbbbeeeeeeeeeeb:
Contact : bbb b
queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * * ** * * * * *** * * * **** * * ** :
4mmy_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr : B SSS EEEEEEEEE TTT SS EEEEEEE -------- SSSS EE SS SEEEEEEEE S-- TTTTS EEEEE - SS:
ExpBur :ebeeeeeeeeeebebbbeeeeebeeeeebbbbbbebeb--------eeeeeeeeeebebebeeeeeeeeeeebbbeee--beeeeebebebebebe-bee:
Contact : b bb b
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
: * * * ** * * * * ** * * * * *** * * :
4mmy_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr :SEEETTS EEEEEEEEEEE SS BTTEEEEEE TT EEEEE- SS SSS EEEEEETT---EEEEEEEEESSB- TT EEEEEEEEEE SS :
ExpBur :eebebbeebebbbebebbbeeebbbebebbbebeebbebebb-beeeeebbeeeeeeeeeee---eeebbbebeeeb-eeeeeeebbbebbbeeeeeeee:
Contact : b b b b b b
queryA 891:SVELHANVTCNN: 902
:** *:
4mmy_A_1 710:SVKFDLQIQSSN: 721
SecStr :EEEEEEEEE :
ExpBur :ebebebbbebeb:
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[assembly_id:1]
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