[pdbjlvh2]Protein Model on 8t2v_A_1_M

Protein Model on 8t2v_A_1_M_1 (TEMPLATE: 8t2v )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [946 aa]	Integrin alpha-IIb :ITA2B_HUMAN
2	b		M 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	850E 851E(N) (identity: 50.0 %/30.9 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8t2v_A_1 identity=30.9%

queryA       396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
                : **   ** ** *          *     ***      * *                   * *  ****      **  **   **  **** * * *  :
8t2v_A_1     227:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 319
SecStr          : GGGTT  TTSEEEEE  SS SSS EEEEEETTHHHHT EEEEE T-----T  EEEEEE SSTT  TTSSEEEE SS SSS EEE-EEETT- EE  SS:    
ExpBur          :eeebeebebbebbbebbbeeeeeeebbbbbbbbbbeebbbbbbbbe-----ebeeeeebeeeeeebebbebbbbbbbbeeeeebbb-bbbbe-bebeeee:    

queryA       492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
                :      ***           **      * *   *  **** **  * *   **  * ** **       * *  * *   **   ***           :
8t2v_A_1     320:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 416
SecStr          : S EE BEEEEE   STT    S SEE-EE  STT--  BTSEEEEEESTTSSSS EEEEEETT TTTTS EEEEE EETTEE SS SEEEE  S TT  :    
ExpBur          :eeebbbbbbbbbebeeeeeebeeeeee-bebeeee--bebbbbbbebeebbeeeeebbbbbbbebbeebebbbbbbbbeeebbeeeeebebebebeeebb:    

queryA       579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
                :  ** *  *  *    *  *  ***    *  *    ***             *     *            **  *       ***        *   *:
8t2v_A_1     417:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 508
SecStr          :--TTSSEEEEE SS SSS EEEEEETTTTEEEEEEE  EEEEEEEEEE SEE TT  - EE TTS  EE EEEEEEEEEEE SS  S-----S  EEEEE:    
ExpBur          :--bbebbebeeebeeeebbbbbbbbbebeebbbbebbbbbebebebeeebbbeeeee-ebeeeeeeeebbbbebebbbbbeeeeeee-----ebbbbbeb:    

queryA       676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
                :***    *  ** *  *            *         * * *              *  ***  *** **   *         *      *    *  :
8t2v_A_1     509:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 593
SecStr          :EES SS GGG SEEETTT  -------SEEEEEE  TT  S EEEEEEEEE  GGG    SS EEEEEEEE     T--------T   S EEEE  EEE:    
ExpBur          :ebbeeeeeeebbbbbeeeee-------bebeeebebbeeeeeeeeebebbbeeeeebeeeebebbbbbebeeeeeee--------eeeeebebeeeeebe:    

queryA       762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
                :         ****  *   *    *   *  *   *   *       *  * **   *  * * *    *              *    *      *   :
8t2v_A_1     594:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 686
SecStr          :E-EEEE  SS TTSS    EEEEEEEE  - EETTS EEEEEEEEEEE SS  SSEEEEEE  TT  EEEEEESS SS   -- EEEEESSS---SEEEE:    
ExpBur          :e-ebbbbeebeeeeebebebebeeeeeee-ebebebebebbbebebebebbbbbbbbbbbbbbeebeeeebebeeeeeeee--ebeeeeeee---eebbe:    
Contact         :                                                                                         bb         

queryA       861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
                :*    *  *        *          * **         *   :
8t2v_A_1     687:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 730
SecStr          :EEEETT - TT EEEEEEEEEE   SSS SEEEEEEEEE   SSS:    
ExpBur          :bebbeeb-eeebeebbebebebeebeeeeeebebebbbebebeee:

Protein Model on 8t2v_A_1_M_1 (TEMPLATE: 8t2v )

Input Residue Numbers for Focused Sites