Protein Model on 8gce_A_1_B_1
(TEMPLATE: 
8gce
)Protein Model on 8gce_A_1_B_1
(TEMPLATE: 8gce
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [912 aa] | Integrin alpha-IIb :ITA2B_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [676 aa] | Integrin beta-3 :ITB3_HUMAN | 400R(F) 401A(D) 403Y 406Y 429H(W) 455Q 456I(M) 457G(A) 459Y 462G(H) 484L 487G(M) 489Q(S) 490R 491G(A) 516Y 520R 545L(Y) 583R(F) 680H(Q) 681R(K) 682T(P) 685R 719Q(R) 720D 722I(L) 723S 724P 836K(E) 838H(F) 839S(E) 840Q(R) 841I(L) (identity: 36.4 %/30.9 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:8gce_A_1 identity=30.9% |
queryA 396:TPEVRAGYLGYTVTW--LPSRQKTSLLASGAPRYQH-MGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRG-: 491
: ** ** ** * * *** * * * * **** ** ** ** **** * * * :
8gce_A_1 258:NPEYFDGYWGYSVAVGEFDGDLNTTEYVVGAPTWSWTLGAVEILDS-----YYQRLHRLRGEQMASYFGHSVAVTDVNGDGRHDLL-VGAPL-YMESRAD: 350
SecStr : TTTTT BTSS B SS TTTT B EESS TTTT EEEEE T-----T EEEEEE SSTTS TTSSEEEE TTSSSS EEE-EEETT- EE SS:
ExpBur :eeebeebebbebbbebebeeeeeeebbbbbbbbbbeebbbbbbbbb-----ebeeebebebeeeebebbebbbbbebbeeebebbb-bbbbe-bebeeee:
Contact : bb b b bb bbb b b b b bbb
queryA 492:------GRVFIYQR----RQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGI: 578
: *** ** * * * **** ** * * ** * ** ** * * * * ** *** :
8gce_A_1 351:RKLAEVGRVYLFLQPRGPHALGAPSLL-LTGTQLY--GRFGSAIAPLGDLDRDGYNDIAVAAPYGGPSGRGQVLVFLGQSEGLRSRPSQVLDSPFPTGSA: 447
SecStr : S EE EEEEE STT S SEE-EE STT-- TTS EEEEESTT SSS EEEEEETT SSSSS EEEEEEB SSSB SS SEEEE S TTS :
ExpBur :eeebebbbbbbbebeeeeeebeeeebe-bebeeee--bebbbbbbebeebbeeeebbbbbbbbebbeeeebbbbbbbbeeebbeeeebbebebebeeebb:
Contact : bb b b b b
queryA 579:QWFGRSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSL-IPQFQGRLVANLTYTL: 675
: ** * * * * * *** * * *** * * ** * *** * *:
8gce_A_1 448:--FGFSLRGAVDIDDNGYPDLIVGAYGANQVAVYRAQPVVKASVQLLVQDSLNPAVK-SCVLPQTKTPVSCFNIQMCVGATGHNIPQ-----KLSLNAEL: 539
SecStr :--EEEE SS SSSSSS EEEEETTTTEEEEE EEEEEEEEE S B TT - EE TTS EE EEEEEEEEEE SS S-----S EEEEEE:
ExpBur :--bbebbebeebbeebebbbbbbbbeebbebbbbbbbbbbebebebeeeebbeeeee-eeebeeeeeebbbbebebbbbbebeebee-----ebebebeb:
Contact : b b
queryA 676:QLDGHRTR--RRGLFPGGRHELRRNIAVTTSMSCTDFSFHFPVC------------VQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSE: 761
:*** * ** * * * * * * * *** *** ** * * * * :
8gce_A_1 540:QLDRQKPRQGRRVLLLGSQQ-------AGTTLNLDLGGKHSPICHTTMAFLRDEADFRDKLSPIVLSLNVSLPPTEA--------GMAPAVVLHGDTHVQ: 624
SecStr :ESSTTS STT EEETTT S-------SEEEEEEE TT S EEEEEEEEE TTT SS EEEEEEEE T--------TS SSEEEE EEE:
ExpBur :bbbeeeeeebebbbbbeeee-------ebeeeebebeeeeeeeeeebebbbbeeeebeeeeeebbbbbebeeeeeee--------eebeebbeeeeeebe:
Contact : bbb b b bb bbb
queryA 762:TWEIPFEKNCGEDKKCEANLRVSFSPARSRALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSF-RKVEMLKPHSQIPVSCEELPEESRLLSRALS: 860
: **** * * * * * * * * * ** * * * * * * * * :
8gce_A_1 625:E-QTRIVLDCGEDDVCVPQLQLTASVTGS-PLLVGADNVLELQMDAANEGEGAYEAELAVHLPQGAHYMRALSNVEGFERL--ICNQKKENE---TRVVL: 717
SecStr :E-EE B SS SSS EEEE -S TTS EEEEEEEEESSS BTT EEEEE TTEEE SS SS SS -- S SSS--- TT S:
ExpBur :e-ebbbeeebeeeeeeebebebeeeeeee-ebbbbbebebebebeebbebbbbbbbbbbbeeeebbeeebbebeeeeeeee--bebbbeeee---eeeeb:
Contact : b b bbbb
queryA 861:CNVSSPIFKAGHSVALQMMFNTLVNSSWGDSVELHANVTCNNEDS: 905
:* * * * * ** * :
8gce_A_1 718:CELGNPM-KKNAQIGIAMLVSVGNLEEAGESVSFQLQIRSKNSQN: 761
SecStr : S B- TT EEEEEEEEEE TTS S EEEEEE S SSS:
ExpBur :eeebeeb-eeeeeeeebbebeeeebeeeeeebebebbbbbebeee:
|
[assembly_id:1]
[help]