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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [534 aa] | Integrin alpha-V :ITAV_HUMAN | |
2 | b | G 1 (G) | branched(oligosaccharide) | alpha-D-mannopyranose-(1-6)-alpha-D-mannopyranose-(1-4)-[alpha-D-mannopyranose-(1-3)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 434L(Y) 436F(Y) 450T(N) (identity: 0.0 %/33.3 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7y1t_A_1 identity=33.3% |
queryA 403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494 :**** * ** ** * * * * * * *** * * ****** * * *: 7y1t_A_1 251:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 345 SecStr : BTSSEEEE SS SSS EEEEEESSHHHHT EEEEE ----TTT EEE SSTT TTSEEEEE SSSSS EEE-EEESS EEE SS EEE EE: ExpBur :ebbebbbbbebeeeeeebbbbbbbebeeeebbbbbbb----beebeeeeebebebeebebbebbbbbbbbeeeebbbb-bbbbbbeeeeeebeeebbbbb: Contact : b b b queryA 495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582 : * * * * *** ** * * ** * * ** * ******* ** *** ** ** **: 7y1t_A_1 346:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 436 SecStr :EEEEE SS EEEEEEE SSTT-- TTSEEEEEESSS SSS EEEEEETT TTTT EEEEE SSS SS SEEEE ------- SSSS TT: ExpBur :bbbbbeeebeeeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbeeeebbebeb-------eeeeeeeebbbbb: queryA 583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQ: 662 : * * * * * *** * *** * * * * * : 7y1t_A_1 437:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSIXXXXXXXXXXXXXXXXXXXFNVRFCLKADGKGVLPR: 520 SecStr :SEEEEEE SSSSSS EEEEEETTTTEEEEE B EEEEEEEEEESS ------------------- EEEEEEEEESSS S: ExpBur :eebebeeebbebebbbbbbbbbebbebbbbbbbbbbebeeeeeeeeee-------------------eeeebbbbbebeeebee: |