Protein Model on 7usm_A_1_M_1 (TEMPLATE: 7usm )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(ITAL_HUMAN) A 1 (A) polymer(polypeptide(L)) [848 aa] Integrin alpha-M :ITAM_HUMAN
2 b M 1 (A) non-polymer(NAG) 2-acetamido-2-deoxy-beta-D-glucopyranose 1023V (identity: 100.0 %/36.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7usm_A_1 identity=36.2%
queryA        26:YNLDVRGARSFSPPRAGRHFGYRVLQV-GNGVIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120
                : ***   *  *      * **  * *  *  * **** *    *  ******   ** * *  *          **  **        *** *    ** :
7usm_A_1       1:FNLDTENAMTFQ--ENARGFGQSVVQLQGSRVVVGAPQEIVAANQRGSLYQCDYSTGSCEPIRLQVPVEAVNMSLGLSLAATTSPPQLLACGPTVHQTCS:  98
SecStr          :  B  TT EEEE--   TTTTSEEEEETTTEEEEE TT EEETTEE  EEEEETTTTEEEE       SS    TTSEEEEEETTEEEEEEEEEEEEE S:    
ExpBur          :ebbbeeeebebe--eebeebbebbbbbeeeebbbbbbebeeeeeeebbbbbbbeeeeebeebebeeeeeebebbbbebbbeeeeeeebbbbbbbbeeeee:    

queryA       121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220
                : ***  *** **  **                                                                                    :
7usm_A_1      99:ENTYVKGLCFLFGSNLR-----------------------------------------------------------------------------------: 115
SecStr          :S EEEEEEEEEE SSSS-----------------------------------------------------------------------------------:    
ExpBur          :eeeebeebbbebeeebe-----------------------------------------------------------------------------------:    

queryA       221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320
                :                                                                                                    :
7usm_A_1      -1:----------------------------------------------------------------------------------------------------:  -1
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       321:KDLFTELQKKIYVIEGTSKQDLTSFNM-------------------------------------------------------------------------: 347
                :                                                                                                    :
7usm_A_1     116:---------------------------QQPQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 188
SecStr          :---------------------------     --------------------------------------------------------------------:    
ExpBur          :---------------------------ebeee--------------------------------------------------------------------:    

queryA        -1:----------------------------------------------------------------------------------------------------:  -1
                :                                                                                                    :
7usm_A_1     189:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 288
SecStr          :----------------------------------------------------------------------------------------------------:    
ExpBur          :----------------------------------------------------------------------------------------------------:    

queryA       348:--------------------------------------------ELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGY: 403
                :                                            * *  * **           **  *****   *       ***            *:
7usm_A_1     289:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEMSQEGFSAAITSNGPLLSTVGSYDWAGGVF-LYTSKEKSTFINMTRVDSDMNDAY: 387
SecStr          :------------------------------------------- TT  TTSEEEE SSSEEEEETTHHHHTBEEE-EESSSS EEEE     TTTTTT  :    
ExpBur          :-------------------------------------------eeebbebebbbbbeebbbbbbbbbeeebbbbb-bbeeeeeeeebebeeeeeebeebe:    

queryA       404:LGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQ: 501
                :***       *     *  ******* * *  *   *  * *       ***** ***  ** ****  * * * *****  *   *** *      *  :
7usm_A_1     388:LGYAAAII-LRNRVQSLVLGAPRYQHIGLVAMFR--QNTGMWESNANVKGTQIGAYFGASLCSVDVDSNGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGR: 484
SecStr          :BTSEEEEE-EETTEEEEEEEETTSTTTBEEEEEE--EETTEEEEEEEEE  STTS BTS EEEE SS SSS  EEEEEEEEEE SSBEEEEEEEE   TT:    
ExpBur          :bbebebeb-eeeeeebbbbbbbebeeebbbbbbb--eeeeebeeebebebeeeebbbbbbbbbbebeeeeebbbbbbbbbebeeeeebbbbbbbeebeee:    

queryA       502:LGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEE--QGAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLAD: 598
                :        * *  * * **** * * * * *** * *** *** **   **** * *  * * **  **** *       * ** *  *  **  *** *:
7usm_A_1     485:ARWQCDAVLYGEQGQPWGRFGAALTVLGDVNGDKLTDVAIGAPGEEDNRGAVYLFHGTSGSGISPSHSQRIAGSKLSPRLQYFGQSLSGGQDLTMDGLVD: 584
SecStr          :      EEEE  TTBTT  TTS EEE   SSSSSS  EEEEETTHHHHT EEEEE EETTTEE SS SEEEEHHHH TT  STTSEEE SS SSSSSS E:    
ExpBur          :eebeeeeebebeeeeeebebbebbbebeebbeeebbbbbbbbbbbeeeebbbbbbbbeeeebbeeeeebebbbeeeeeebeebbebbbeeebbbebebeb:    

queryA       599:VAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI-KSLIPQF-QGRLVANLTYTLQLDGHRTRRRGLFPGGRHELR: 696
                :  ***      * * **      * * * *      **        **      *    **       *      ** * **  *   *  *       *:
7usm_A_1     585:LTVGAQGHVLLLRSQPVLRVKAIMEFNPREVARNVFECXXXXXXG-KEAGEVRVCLHVQKSTRDRLREGQIQSVVTYDLALDSGRPHSRAVFNETKNSTR: 683
SecStr          :EEEEETTEEEEEEB  EEEEEEEEEESSSSB HHHH  ------ - EEEEEEEEEEEEESS  S  TTT  EEEEEEEEETTTSSS S EETTTSSSEE:    
ExpBur          :bbbbbebbbbbbbbbbbbebebebebeeeebeeebbee------e-eeebebebbbebeeebebebeeeebebebbbbbbbbeeeeebbbbbeeeeeeeb:    

queryA       697:RNIAVT-TSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRL: 795
                :*   *      *       * *  *  ***   *****    ***    * *   *          *   ******* *  *   *   **      *  :
7usm_A_1     684:RQTQVLGLTQTCETLKLQLPNCIEDPVSPIVLRLNFSL---VGTPLS--AFGNLRPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMSLDCLVV: 778
SecStr          :EEEEEE SS EEEEEEEEESS  S TTS EEEEEEEEE---EE  BT--TTTSB  EE TTS  EEEEEE B   SSSS       EEEEE TT   B T:    
ExpBur          :eeeeebeeeeeebebebbbeeebeeeeebbebebebeb---ebeebe--ebeebebbbbeebeeebebebbbebeeeeeeebebebbbebebeeeebbbb:    

queryA       796:TAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLS-RALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDS: 891
                :       *     *  ** *  *    **  ** ***               **              **    ***     *     *      * *  :
7usm_A_1     779:GGPREFNVTVTVRNDGEDSYRTQVTFFFPLDLSYRKVSTXXXXXXXXXWRLACESXXXXXXXXXLKSTSCSINHPIFPENSEVTFNITFDVDSKASLGNK: 878
SecStr          :TS SEEEEEEEEE  SS EES EEEEEB TTEEEEE   ---------   EEE --------- B  EEE STTEE TT EEEEEEEEEE TT    SE:    
ExpBur          :ebeeebebebbbebeebbbebbebbbebeeebeeeebee---------eebebee---------eeebbbebbeeebeeebebebebbbbbeeebebeee:    

queryA       892:VELHANVTCNNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQ: 991
                :  * ****  *               *  *           ** *  **          * ***           *    *  **       *     * :
7usm_A_1     879:LLLKANVTSEN-NMPRTNKTEFQLELPVKYAVYMVVTSHGVSTKYLNFTASENTSRVMQHQYQV---SNLGQRSLP-ISLVFLVPVRLNQTVIWDRPQVT: 973
SecStr          :EEEEEEEE TT-     GGGEEEEEEEB EE  EEEE  TTS  EE    SS  EEEEEEEEEE---EE SS  EE-EEEEEEEEEEETTEESBS  EEE:    
ExpBur          :bebebbbebeb-eeeeeeebeeeeebebebbbebbbeeeeebeeebeeeeeeeeeeebebbbeb---bbebebebe-bebbbbbbbebeebebbeebebe:    

queryA       992:MEPPVPCHYEDLERLPDAAEPCLPGALFRCPVV:1024
                :            ****          *   ***:
7usm_A_1     974:FSENLSSTCHTKERLPSHSD--FLAELRKAPVV:1004
SecStr          :ESS    EEEEEEE  S S --HHHHHHH  EE:    
ExpBur          :beeebeeeeeeeeeeeeeee--eeeebeeebeb:    
Contact         :                               b

Input Residue Numbers for Focused Sites

ex) 2,15,123