Protein Model on 7usm_A_1_B_1
(TEMPLATE: 
7usm
)Protein Model on 7usm_A_1_B_1
(TEMPLATE: 7usm
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[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [848 aa] | Integrin alpha-M :ITAM_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [673 aa] | Integrin beta :A0A494C0X7_HUMAN | 47Y(Q) 62G(Q) 114G(T) 116S(H) 118T 119C 120D(S) 121Q(E) 122N 123T 125L(V) 351S(Q) 354I(F) 373W 401A(D) 403Y 406Y 426R 429H 430M(I) 455Q 456I 457G 459Y 484L(H) 486Y 518L(W) 520R 580W(Y) 680H(G) 681R 683R(H) 762T 829F(Y) 830R 831K 844S(A) 847E(S) 924N(Y) 926L(V) 928Q(T) 936Y 961I(L) (identity: 46.5 %/36.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:7usm_A_1 identity=36.2% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQV-GNGVIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120
: *** * * * ** * * * * **** * * ****** ** * * * ** ** *** * ** :
7usm_A_1 1:FNLDTENAMTFQ--ENARGFGQSVVQLQGSRVVVGAPQEIVAANQRGSLYQCDYSTGSCEPIRLQVPVEAVNMSLGLSLAATTSPPQLLACGPTVHQTCS: 98
SecStr : B TT EEEE-- TTTTSEEEEETTTEEEEE TT EEETTEE EEEEETTTTEEEE SS TTSEEEEEETTEEEEEEEEEEEEE S:
ExpBur :ebbbeeeebebe--eebeebbebbbbbeeeebbbbbbebeeeeeeebbbbbbbeeeeebeebebeeeeeebebbbbebbbeeeeeeebbbbbbbbeeeee:
Contact : b b b b bbb
queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220
: *** *** ** ** :
7usm_A_1 99:ENTYVKGLCFLFGSNLR-----------------------------------------------------------------------------------: 115
SecStr :S EEEEEEEEEE SSSS-----------------------------------------------------------------------------------:
ExpBur :eeeebeebbbebeeebe-----------------------------------------------------------------------------------:
Contact :bbb b
queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320
: :
7usm_A_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 321:KDLFTELQKKIYVIEGTSKQDLTSFNM-------------------------------------------------------------------------: 347
: :
7usm_A_1 116:---------------------------QQPQKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 188
SecStr :--------------------------- --------------------------------------------------------------------:
ExpBur :---------------------------ebeee--------------------------------------------------------------------:
queryA -1:----------------------------------------------------------------------------------------------------: -1
: :
7usm_A_1 189:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 288
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 348:--------------------------------------------ELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGY: 403
: * * * ** ** ***** * *** *:
7usm_A_1 289:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHEMSQEGFSAAITSNGPLLSTVGSYDWAGGVF-LYTSKEKSTFINMTRVDSDMNDAY: 387
SecStr :------------------------------------------- TT TTSEEEE SSSEEEEETTHHHHTBEEE-EESSSS EEEE TTTTTT :
ExpBur :-------------------------------------------eeebbebebbbbbeebbbbbbbbbeeebbbbb-bbeeeeeeeebebeeeeeebeebe:
Contact : b b b b b
queryA 404:LGYTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQ: 501
:*** * * ******* * * * * * * ***** *** ** **** * * * ***** * *** * * :
7usm_A_1 388:LGYAAAII-LRNRVQSLVLGAPRYQHIGLVAMFR--QNTGMWESNANVKGTQIGAYFGASLCSVDVDSNGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGR: 484
SecStr :BTSEEEEE-EETTEEEEEEEETTSTTTBEEEEEE--EETTEEEEEEEEE STTS BTS EEEE SS SSS EEEEEEEEEE SSBEEEEEEEE TT:
ExpBur :bbebebeb-eeeeeebbbbbbbebeeebbbbbbb--eeeeebeeebebebeeeebbbbbbbbbbebeeeeebbbbbbbbbebeeeeebbbbbbbeebeee:
Contact : b b bb bbb b b b
queryA 502:LGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEE--QGAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLAD: 598
: * * * * **** * * * * *** * *** *** ** **** * * * * ** **** * * ** * * ** *** *:
7usm_A_1 485:ARWQCDAVLYGEQGQPWGRFGAALTVLGDVNGDKLTDVAIGAPGEEDNRGAVYLFHGTSGSGISPSHSQRIAGSKLSPRLQYFGQSLSGGQDLTMDGLVD: 584
SecStr : EEEE TTBTT TTS EEE SSSSSS EEEEETTHHHHT EEEEE EETTTEE SS SEEEEHHHH TT STTSEEE SS SSSSSS E:
ExpBur :eebeeeeebebeeeeeebebbebbbebeebbeeebbbbbbbbbbbeeeebbbbbbbbeeeebbeeeeebebbbeeeeeebeebbebbbeeebbbebebeb:
Contact : b b b b
queryA 599:VAVGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI-KSLIPQF-QGRLVANLTYTLQLDGHRTRRRGLFPGGRHELR: 696
: *** * * ** * * * * ** ** * ** * ** * ** * * * *:
7usm_A_1 585:LTVGAQGHVLLLRSQPVLRVKAIMEFNPREVARNVFECXXXXXXG-KEAGEVRVCLHVQKSTRDRLREGQIQSVVTYDLALDSGRPHSRAVFNETKNSTR: 683
SecStr :EEEEETTEEEEEEB EEEEEEEEEESSSSB HHHH ------ - EEEEEEEEEEEEESS S TTT EEEEEEEEETTTSSS S EETTTSSSEE:
ExpBur :bbbbbebbbbbbbbbbbbebebebebeeeebeeebbee------e-eeebebebbbebeeebebebeeeebebebbbbbbbbeeeeebbbbbeeeeeeeb:
Contact : bb b
queryA 697:RNIAVT-TSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPILRPSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARSRALRL: 795
:* * * * * * *** ***** *** * * * * ******* * * * ** * :
7usm_A_1 684:RQTQVLGLTQTCETLKLQLPNCIEDPVSPIVLRLNFSL---VGTPLS--AFGNLRPVLAEDAQRLFTALFPFEKNCGNDNICQDDLSITFSFMSLDCLVV: 778
SecStr :EEEEEE SS EEEEEEEEESS S TTS EEEEEEEEE---EE BT--TTTSB EE TTS EEEEEE B SSSS EEEEE TT B T:
ExpBur :eeeeebeeeeeebebebbbeeebeeeeebbebebebeb---ebeebe--ebeebebbbbeebeeebebebbbebeeeeeeebebebbbebebeeeebbbb:
Contact : b
queryA 796:TAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLS-RALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGDS: 891
: * * ** * * ** ** *** ** ** *** * * * * :
7usm_A_1 779:GGPREFNVTVTVRNDGEDSYRTQVTFFFPLDLSYRKVSTXXXXXXXXXWRLACESXXXXXXXXXLKSTSCSINHPIFPENSEVTFNITFDVDSKASLGNK: 878
SecStr :TS SEEEEEEEEE SS EES EEEEEB TTEEEEE --------- EEE --------- B EEE STTEE TT EEEEEEEEEE TT SE:
ExpBur :ebeeebebebbbebeebbbebbebbbebeeebeeeebee---------eebebee---------eeebbbebbeeebeeebebebebbbbbeeebebeee:
Contact : bbb b b
queryA 892:VELHANVTCNNEDSDLLEDNSATTIIPILYPINILIQDQEDSTLYVSFTPKGPKIHQVKHMYQVRIQPSIHDHNIPTLEAVVGVPQPPSEGPITHQWSVQ: 991
: * **** * * * ** * ** * *** * * ** * * :
7usm_A_1 879:LLLKANVTSEN-NMPRTNKTEFQLELPVKYAVYMVVTSHGVSTKYLNFTASENTSRVMQHQYQV---SNLGQRSLP-ISLVFLVPVRLNQTVIWDRPQVT: 973
SecStr :EEEEEEEE TT- GGGEEEEEEEB EE EEEE TTS EE SS EEEEEEEEEE---EE SS EE-EEEEEEEEEEETTEESBS EEE:
ExpBur :bebebbbebeb-eeeeeeebeeeeebebebbbebbbeeeeebeeebeeeeeeeeeeebebbbeb---bbebebebe-bebbbbbbbebeebebbeebebe:
Contact : b b b b b
queryA 992:MEPPVPCHYEDLERLPDAAEPCLPGALFRCPVV:1024
: **** * ***:
7usm_A_1 974:FSENLSSTCHTKERLPSHSD--FLAELRKAPVV:1004
SecStr :ESS EEEEEEE S S --HHHHHHH EE:
ExpBur :beeebeeeeeeeeeeeeeee--eeeebeeebeb:
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[assembly_id:1]
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