[pdbjlvh2]Protein Model on 6om1_G_1_H

Protein Model on 6om1_G_1_H_1 (TEMPLATE: 6om1 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:4]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	G 1 (G)	polymer(polypeptide(L)) [596 aa]	Integrin alpha-V :ITAV_HUMAN
2	b		H 1 (H)	polymer(polypeptide(L)) [336 aa]	Integrin beta-8 :ITB8_HUMAN	403Y 406Y 426R 428Q(R) 429H(T) 455Q 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) (identity: 41.2 %/31.7 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:6om1_G_1 identity=31.7%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
6om1_G_1     221:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 315
SecStr          : BTSEEEEE SSSSSS EEEEEETTHHHHT EEEEE ----TTT  EEEEEE SSTTS TTSEEEEE SSSSS  EEE-EEETT EEE TTS EEE BEE:    
ExpBur          :ebbebbbebebeeeeebbbbbbbbebeeeebbbbbbb----beebeeeeebebeeeebbbbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :b  b                    b  bb                         bbb b  b                     b b   bbbb  b    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW---------FG: 582
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **         **:
6om1_G_1     316:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSGCPPSFG: 406
SecStr          :EEEEE TTS EEEEEEE SSTT--S BTS EEEEESTT SSS EEEEEETT SGGG  EEEEE EETTEE SS SEEEE -------     SSS   EE:    
ExpBur          :bbbbbeeeeebeeeebebeeee--bebbbbbbebbbbbeeeeebbbbbbbbbeeeeebbbbbbbbeeebbeeebbbebeb-------ebeeeeeeebbbb:    
Contact         :                     b   b                        b                                           bb    

queryA       583:RSIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGRLVANLTYTLQLDGH: 680
                : *  *  *    *  *  ***      *    ***          *         **           *   *           * *   *     *   :
6om1_G_1     407:YSMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADG-----KGVLPRKLNFQVELLLD: 501
SecStr          :EEEEEEE SS SSS EEEEEEGGGTEEEEEEE  EEEEEEEEEEESSEE TTT  EE SSSS EE EEEEEEEEEEEE----- SS  SEEEEEEEEEE :    
ExpBur          :ebbebebebbebebbbbbbbbbbbbebbbbbbbbbbebebebebeeeebebeeeebebeeeeeebbbbebebbbebeb-----eeebeeebebebbbebb:    
Contact         :b                    b                                                                              

queryA       681:RTR-----RRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :        ** **   *   *     *     * *              *   **       *:
6om1_G_1     502:KLKQKXAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 564
SecStr          : SS  -    EEETTT SSEEEEEEEEESSS  EEEEEEEEE  GGG    SS EEEEEEEEE:    
ExpBur          :eeeee-eebbbbbbeeeeeeeeeebebebeeeeeeeebebbbeeeeebeeeeeebbbbbebeb:

Protein Model on 6om1_G_1_H_1 (TEMPLATE: 6om1 )

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