Protein Model on 6ndg_R_1_P_1 (TEMPLATE: 6ndg )

CurrentView:HTML5 Change to:[JAVA] DOWNLOAD:
[sequence-replaced 3D model] [for PyMOL]
[3D template]
[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:6]

Window size :
[small] [medium] [large]

[help]


MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)
type description a(query A)
1 a A(ITAL_HUMAN) R 1 (R) polymer(polypeptide(L)) [191 aa] Integrin alpha-2 :ITA2_HUMAN
2 b P 1 (P) polymer(polypeptide(L)) [131 aa] Snaclec rhodocetin subunit gamma :SLEC_CALRH 165M(N) 225K(Q) 226H(Y) 227M(G) 228L(G) 229L(D) (identity: 0.0 %/29.2 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:6ndg_R_1 identity=29.2%
queryA       155:VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSN--TSYQFAAVQFSTSYKTEFDFSDY-VKRKDPDALLKHVKHMLLLTNTFGAINYVATEVFREELGA: 251
                : * *   * * *  *        *       *    *  *    *        *    *  *     *          ******** *          * :
6ndg_R_1      24:IDVVVVCDESNSIYP--WDAVKNFLEKFVQGLDIGPTKTQVGLIQYANNPRVVFNLNTYKTKEEMIVATSQTSQYGGDLTNTFGAIQYARKYAYSAASGG: 121
SecStr          :EEEEEEEE STT   --THHHHHHHHHHHHTS BSTTSEEEEEEEESSSEEEEE TTS SSHHHHHHHHTT      S   HHHHHHHHHHHTTSTTTT :    
ExpBur          :bbbbbbbbbbeebee--bebbeebbeebbeebeeeeeebbbbbbbbbeeeeeebebeeeeeeeebbebbeebeeeebeebbbbebbeebbeebbeeebbe:    
Contact         :          b                                                              bbbbb                      

queryA       252:RPDATKVLIIITDGEATDSGNIDAAKD------IIRYIIGIGKHFQ-----TKESQETLHKFASKPASEF: 310
                :*  ****    ****  *     *  *      * *  *            **         ** *    :
6ndg_R_1     122:RRSATKVMVVVTDGESHDGSMLKAVIDQCNHDNILRFGIAVLGYLNRNALDTKNLIKEIKAIASIPTERY: 191
SecStr          : TTSEEEEEEEESS  SSGGGHHHHHHHHHHTT EEEEEEE HHHHHTT   HHHHHHHHHHS SSHHHH:    
ExpBur          :beebeebbbbbbbbebebeeeeeebbeebeeeebebbbbbbbbebeeeeeeeeebbebbeebbbeeeeeb:    


Input Residue Numbers for Focused Sites

ex) 2,15,123