Protein Model on 6naj_A_1_B_1
(TEMPLATE: 
6naj
)Protein Model on 6naj_A_1_B_1
(TEMPLATE: 6naj
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ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | A 1 (A) | polymer(polypeptide(L)) [920 aa] | Integrin alpha-V :ITAV_HUMAN | |
| 2 | b | B 1 (B) | polymer(polypeptide(L)) [690 aa] | Integrin beta-3 :ITB3_HUMAN | 349L(F) 351S(Q) 354I(F) 368V(P) 373W 403Y 406Y 426R 428Q(R) 429H(T) 456I(M) 457G(A) 459Y 462G(F) 484L 486Y(M) 488E(R) 490R(E) 516Y(F) 520R 545L(Y) 583R(Y) 679G(K) 680H(L) 681R(K) 682T(Q) 717C(E) 719Q(R) 720D 723S(T) 830R(I) 835L(R) 842P(R) (identity: 24.2 %/29.2 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:6naj_A_1 identity=29.2% |
queryA 340:QDLTSFNMELSSSGISADLSRGHAVV-GAVGAKDWAGGFL-----DLKADLQDDTF---IGNEPLTPEVRA----GYLGYTVTWLP-SRQKTSLLASGAP: 425
:** * * * * * * * * * * * **** * ** *:
6naj_A_1 145:QDIDADGQGFCQGGFSIDFTKADRVLLGGPGSFYWQGQLISDQVAEIVSKYDPNVYSIKYNNQLATRTAQAIFDDSYLGYSVAVGDFNGDGIDDFVSGVP: 244
SecStr :S STTTTTT TTSEEEE SSSEEEEEETTHHHHTBEEEEEEHHHHHHT TT SS TT EE GGG S BTSEEEEE STT S EEEEEET:
ExpBur :eebebebbbebebbebbbbbeeebbbbbbbbbbeebbbbbbbebebbeeeeeeeeeeeebeeebebeeeeeeeeebebbbbbbbbebeeeeebbbbbbbb:
Contact : b b b b b bb b b
queryA 426:RY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRVFIYQRRQLGFEEVSELQGDPGYPL: 518
:* * * * * * * *** * * ****** * * * * * * * :
6naj_A_1 245:RAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQVSVSLQRASGDFQTTKLNGFEVF--: 337
SecStr :THHHHT EEEEE ----TTT EEEEEE SSTTS TTSEEEEE SSSSSS EEE-EEETT EEE SS EEE EEEEEE SSSS EEEEEE SSTT--:
ExpBur :ebeeeebbbbbbb----beebeeeeebebebeebebbbbbbbbbbbeeeebbbb-bbbbebebeeeeeeeebbbbbbbbbbeeebebeeeebebeeee--:
Contact :b bb bb b b b b bbbbbbb b b
queryA 519:GRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGRSIHGVKDLEGDGLADVAVGA--ES: 605
: *** ** * * ** * * ** * ******* ** *** ** ** ** * * * * * *** :
6naj_A_1 338:ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSMPPSFGYSMKGATDIDKNGYPDLIVGAFGVD: 430
SecStr : TTSEEEE TTSS SSS EEEEETT SGGG EEEEE EETTEE SS SEEEE ------- S SSS TTSEEEEEE SSSSSS EEEEE SSSS:
ExpBur :bebbbbbbebebbbeeeeebbbbbbbbbbeeeebbbbbbbbeeebbbeeeebebeb-------eeeeeeeebbbbebbebebebbebebbbbbbbbbbbb:
Contact : b b bb b b
queryA 606:QMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDGHRTR---RRGLFPGGR---HELRR: 697
: * *** * ** * * * * * * ** ** ** * * :
6naj_A_1 431:RAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDKLKQKGAIRRALFLYSRSPSHSKNM: 525
SecStr :EEEEE B EEEEEEEEEEE SEE TT EE SSS EE B EEEEEEEEEESSS S-----EEEEEEEEESSSSS SSS EE TTT SSEEEEEE:
ExpBur :ebbbbbbbbbbebebebebeeeebebeeeebebeeeeeebbebebebbbebebeeebee-----ebbbebebebbeeeeeeeeebbbbbeeeeeeeeeeb:
Contact : bbbb bb
queryA 698:NIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSLWEEEGTPRDQR--AQGKDIPPILR---PSLHSETWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * * ** * * * * *** * * * **** * * ** :
6naj_A_1 526:TISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL--------DYRTAADTTGLQPILNQFTPANISRQAHILLD--CGEDNVCKPKLEVSVD-SDQ: 614
SecStr :EEESSS EEEE EE SSSS SS EEEEEEEEE-------- TT TTTS EE SS SEEEEEEEE S-- TTTTS EEEEEE- S :
ExpBur :ebeeeeeeeeeebebbbeeeeebeeeeebbbbbbebee--------eeebeeebeebebeeeeeeeeeeeeebbbeee--beeeeebebebebebe-eee:
Contact : b bb b
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIPVSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSSWGD: 890
: * * * ** * * * * ** * * * * *** * * :
6naj_A_1 615:KKIYIGDDNPLTLIVKAQNQGEGAYEAELIVSIPLQADFIGV-VRNNEALARLSCAFKTENQ---TRQVVCDLGNPM-KAGTQLLAGLRFSVHQQSEMDT: 709
SecStr : EEETTS EEEEEEEEEE SS BTT EEEEE TT EEEE- S SSS EEEEE SS--- EEEEE SSB- SEEEEEEEEEEE TTT S:
ExpBur :eebebeeebebbbebebbbeeebbbebebbbebbebbebeeb-beeeeebeebeeeeeeeee---eeebebebeebb-eeeeeeebbbebebeeeeeeee:
Contact : b b b
queryA 891:SVELHANVTCNN: 902
:** *:
6naj_A_1 710:SVKFDLQIQSSN: 721
SecStr :EEEEEEEEE S :
ExpBur :ebebebebebeb:
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[assembly_id:1]
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