[pdbjlvh2]Protein Model on 5neu_E_8_F

Protein Model on 5neu_E_8_F_8 (TEMPLATE: 5neu )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(ITAL_HUMAN)	E 8 (A)	polymer(polypeptide(L)) [590 aa]	Integrin alpha-V :ITAV_HUMAN
2	b		F 8 (B)	polymer(polypeptide(L)) [448 aa]	Integrin beta-6 :ITB6_HUMAN	428Q(R) 429H(T) 456I(M) 457G(A) 484L 486Y(M) 489Q 490R(E) 516Y(F) (identity: 22.2 %/32.4 %)

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5neu_E_8 identity=32.4%

queryA       403:YLGYTVTWLP-SRQKTSLLASGAPRY-QHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGE------QRGGRV: 494
                :**** *              ** **     * *        *   *      * *   ***      *   *       ******         *  * *:
5neu_E_8     219:YLGYSVAVGDFNGDGIDDFVSGVPRAARTLGMVYIYD----GKNMSSLYNFTGEQMAAYFGFSVAATDINGDDYADVF-IGAPLFMDRGSDGKLQEVGQV: 313
SecStr          : TTSSEE S SSSSSS  EEEEESS TTTT EEEEE ----TTT  EEEE   SSSSS TTSS  EE SSSSS  EEE-E  TT EE  SSSS EE  EE:    
ExpBur          :ebbbbbbbbbbeeeeebbbbbbbbebeeebbbbbbbb----beebeeeeebebeeeebebbebbbbbbbbeeeebbbb-bbbbebeeeeeeeeeebbbbb:    
Contact         :                           bb                          bb                          b b      bbbb    

queryA       495:FIYQRRQLGFEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPL---EEQGAVYIFNGRHGGLSPQPSQRIEGTQVLSGIQW--------FGR: 583
                :     *  *      * *       *** **  * *   **  * *  **       * *******  **   ***  **       **        ** :
5neu_E_8     314:SVSLQRASGDFQTTKLNGFEVF--ARFGSAIAPLGDLDQDGFNDIAIAAPYGGEDKKGIVYIFNGRSTGLNAVPSQILEG-------QWAARSCPPSFGY: 404
SecStr          :EEEE  SSS  EEEEEE  SSS--  TTSEEEEEESSS SSS EEEEEESS SGGG  EEEEE B SSSB SS S     ------- S  SSS   S  :    
ExpBur          :bbbbbeeebebeeeebebeeee--bebbbbbbebbebbeeeeebbbbbbbebbeeeebbbbbbbbeeebbbeeeeeebeb-------eeeeeeeebbbbe:    
Contact         :                     b                                                                       bb     

queryA       584:SIHGVKDLEGDGLADVAVGA--ESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQI--KSLIPQFQGRLVANLTYTLQLDG: 679
                :*  *  *    *  *  ***      *    ***          *         **           *   *     *   *        *    * ** :
5neu_E_8     405:SMKGATDIDKNGYPDLIVGAFGVDRAILYRARPVITVNAGLEVYPSILNQDNKTCSLPGTALKVSCFNVRFCLKADGKGVLPR-----KLNFQVELLLDK: 499
SecStr          :B   SS  SSSSS  EEEEETTTTEEEEE B  EEEEE  EEEE SS  TT   S  TTSS    EEEEEEEEEEE  SSS S----- EEEEEEEE  S:    
ExpBur          :bbebeeebbebebbbbbbbbbbbbbbbbbbbbbbbebeeebebeeeebebeeeeeeeeeeeeebbbbebebbbebebeeebee-----ebbbebebbbbe:    
Contact         :                     b                                                                              

queryA       680:HR-TRRRGLFPGGR---HELRRNIAVTTSMSCTDFSFHF--PVCVQDLISPINVSLNFSL: 733
                :     ** **   *   *     *     * *              *   **       *:
5neu_E_8     500:LKGAIRRALFLYSRSPSHSKNMTISRGGLMQCEELIAYLRDESEFRDKLTPITIFMEYRL: 559
SecStr          :      SEEESSS SSSEEEEEEE BSS  EEEEEEEEE  TTT   SSS   EEEEEEE:    
ExpBur          :eeeeeebbbbbeeeeeeeeeebebbeeeeeeeeebebbbeeeeebeeeebebbbbbebeb:

Protein Model on 5neu_E_8_F_8 (TEMPLATE: 5neu )

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