Protein Model on 5es4_G_1_H_1
(TEMPLATE: 
5es4
)Protein Model on 5es4_G_1_H_1
(TEMPLATE: 5es4
)| CurrentView:HTML5 Change to:[JAVA] |
DOWNLOAD: [sequence-replaced 3D model]
[for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
| MOLECULES | contact sites | |||||
| model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
| 1 | a | A(ITAL_HUMAN) | G 1 (G) | polymer(polypeptide(L)) [883 aa] | Integrin alpha-X :ITAX_HUMAN | |
| 2 | b | H 1 (H) | polymer(polypeptide(L)) [674 aa] | Integrin beta-2 :ITB2_HUMAN | 47Y(D) 62G(Q) 97M(L) 114G(T) 116S(H) 118T(E) 120D(G) 121Q(R) 122N 123T(M) 125L 345F 349L(M) 351S(Q) 354I(F) 368V 373W 401A(D) 403Y 406Y 426R 429H 456I 457G 459Y 484L(H) 486Y 488E(Q) 501Q(W) 502L(R) 503G(R) 505E(W) 514P(Q) 518L(W) 520R 580W(Y) 604E(R) 680H(G) 681R 682T(L) 723S(T) 728S(R) 830R 831K(Y) 833E(A) 865S(H) 866P(L) 867I 869K(R) 936Y 1070S(Q) (identity: 35.3 %/37.5 %) | |
| ALIGNMENTS |
| MODEL[1] Protein A "queryA" TEMPLATE:5es4_G_1 identity=37.5% |
queryA 26:YNLDVRGARSFSPPRAGRHFGYRVLQVGNG-VIVGAPGE---GNSTGSLYQCQSGTGHCLPVTLR-GSNYTSKYLGMTLATDPTDGSILACDPGLSRTCD: 120
: *** * ** ** * * * * **** * ** **** ** * * * ** ** *** * * :
5es4_G_1 1:FNLDTEELTAFRVDSAG--FGDSVVQYANSWVVVGAPQKITAANQTGGLYQCGYSTGACEPIGLQVPPEAVNMSLGLSLASTTSPSQLLACGPTVHHECG: 98
SecStr : B SSS EEEE SSS--TTSEEEEETTTEEEEE TT EEETTEEB EEEE TTTS EEE TTSBS BTSEEEEETTTTEEEEEEEEEEEE S:
ExpBur :bbbbeeeebebeeebeb--bbbebbbbeeeebbbbbbeeeeeeebbbbbbebbeeeeebeebeeeeeeebeebbbbebbbeeeeeebbbbbbbbbebebe:
Contact : b b b b b b b
queryA 121:QNTYLSGLCYLFRQNLQGPMLQGRPGFQECIKGNVDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSNTSYQFAAVQFSTSYKTEFDFSDYVKRKDPDAL: 220
: * ** *** * :
5es4_G_1 99:RNMYLTGLCFLL----------------------------------------------------------------------------------------: 110
SecStr :S EEEEEEEEEE----------------------------------------------------------------------------------------:
ExpBur :eeebbbbbbbbb----------------------------------------------------------------------------------------:
Contact :bbb b
queryA 221:LKHVKHMLLLTNTFGAINYVATEVFREELGARPDATKVLIIITDGEATDSGNIDAAKDIIRYIIGIGKHFQTKESQETLHKFASKPASEFVKILDTFEKL: 320
: :
5es4_G_1 -1:----------------------------------------------------------------------------------------------------: -1
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 321:KDLFTELQKKIYVIEGTSKQDL------------------------------------------------------------------------------: 342
: :
5es4_G_1 111:----------------------GPTQLTQRLPVSRQECPRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 188
SecStr :---------------------- SSS EEESSS ------------------------------------------------------------:
ExpBur :----------------------beeeeeeebeeeeeebee------------------------------------------------------------:
queryA -1:----------------------------------------------------------------------------------------------------: -1
: :
5es4_G_1 189:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX: 288
SecStr :----------------------------------------------------------------------------------------------------:
ExpBur :----------------------------------------------------------------------------------------------------:
queryA 343:-------------------------------------TSFNMELSSSGISADLSRGHAVVGAVGAKDWAGGFLDLKADLQDDTFIGNEPLTPEVRAGYLG: 405
: ** * * ** * **** * ** *** * ***:
5es4_G_1 289:XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSFELEMAQEGFSAVFTPDGPVLGAVGSFTWSGGAFLYPPNM-SPTFINMSQENVDMRDSYLG: 387
SecStr :------------------------------------- SSSS TTSEEE SSS EEE SSHHHHT EEE TTS- EEE TT GGGTT TT:
ExpBur :-------------------------------------eeeeeeebbbbebbbbbeebbbbbbbbbebebbbbbbbeeee-eeeebebeeeeeebeebebb:
Contact : b b b b b b b b
queryA 406:YTVTWLPSRQKTSLLASGAPRYQHMGRVLLFQEPQGGGHWSQVQTIHGTQIGSYFGGELCGVDVDQDGETELLLIGAPLFYGEQRGGRVFI--YQRRQLG: 503
:* * * * ******* * * * * ********* ** **** ** * * ***** * *** * * :
5es4_G_1 388:YS-TELALWKGVQSLVLGAPRYQHTGKAVIFT--QVSRQWRMKAEVTGTQIGSYFGASLCSVDVDSDGSTDLVLIGAPHYYEQTRGGQVSVCPLPRGWRR: 484
SecStr :SE-EEEEEETTEEEEEEEETTGGGTBEEEEEE--EETTEEEEEEEEE SSTT BTS EEEE SS SSS EEEEE TT B SSEEE EEEEE SSS :
ExpBur :eb-beebeeeeeebbbbbbbebeebbbbbbbb--eeeeebeeebebebeeeebebbbbbbbbbbeeeebbbbbbbbbbeeeeeeebbbbbbbbeeeeeee:
Contact :b b b bb b b b b bbb
queryA 504:FEEVSELQGDPGYPLGRFGEAITALTDINGDGLVDVAVGAPLEEQ--GAVYIFNGRHG-GLSPQPSQRIEGTQVLSGIQWFGRSIHGVKDLEGDGLADVA: 600
: * * * * **** * * * * *** * ** *** ** **** * * * ** **** * * * * ** * ** *** * *:
5es4_G_1 485:WWCDAVLYGEQGHPWGRFGAALTVLGDVNGDKLTDVVIGAPGEEENRGAVYLFHGVLGPSISPSHSQRIAGSQLSSRLQYFGQALSGGQDLTQDGLVDLA: 584
SecStr : EEE TTEEEEEETS EEEEE SSSSSS EEEEE TTHHHHTBEEEEEEEETTTEE SS S EEEHHHH TT SBTSEEEEEE SSSSSS EEE:
ExpBur :beeeeebbbeeebeebbbbebbbebeebbbeebbbbbbbbbbbeeeebbbbbbbbeeeebbeeeeebbbbbeeebeebeebbebbbbebebbebebebbb:
Contact : b b b b b
queryA 601:VGAESQMIVLSSRPVVDMVTLMSFSPAEIPVHEVECSYSTSNKMKEGVNITICFQIKSLIPQFQGR--LVANLTYTLQLDGHRTRRRGLFPGGRHE-LRR: 697
:*** * * *** * * ***** ** * ** * * * * * ** * * * * *:
5es4_G_1 585:VGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAFECREQVVSE-QTLVQSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSLSR: 683
SecStr :EEETTEEEEEEB EE EEEEEEEESSSB HHHHS SSTTS - EEEEEEEEEEE S SS HHHHS EEEEEEEESTTSS EETTTSSSEE :
ExpBur :bbbebbbbbbbbbbbbbbbeebebeeeebeeebbeeeeeeeee-eeebebbbbbebeeeeeebeeebbeebebebebbbbeeeeeebbebeeeeeeebee:
Contact : b bbb
queryA 698:NIAVTTSMSCTDFSFHFPVCVQDLISPINVSLNFSLWEEEGTPRDQRAQGKDIPPI--LRPSLHSE-----TWEIPFEKNCGEDKKCEANLRVSFSPARS: 790
: * * * ** * ** *** * ** *** * * ******* * * ** *** :
5es4_G_1 684:VRVLGLKAHCENFNLLLPSCVEDSVTPITLRLNFTL------------VGKPLLAFRNLRPMLAADAQRYFTASLPFEKNCGADHICQDNLGISFSFPGL: 771
SecStr :EEE SS EEEEEEEEE S S SSS EEEEEEEEE------------ GGG EE TTS EEEEEE B S TT EEEEEE SS :
ExpBur :ebebbeeeeeeebebebebebeebeebbebebbbeb------------ebeebeeeebbebbbbeeeeeebebebbbeeeeeeeeeeeeebbbebebeee:
Contact : b b b
queryA 791:RALRLTAFASLSVELSLSNLEEDAYWVQLDLHFPPGLSFRKVEMLKPHSQIP---VSCEELPEESRLLSRALSCNVSSPIFKAGHSVALQMMFNTLVNSS: 887
: * * * * ** * * *** * * * * * * ** ** * * :
5es4_G_1 772:KSLLVGSNLELNAEVMVWNDGEDSYGTTITFSHPAGLSYRYVAEGQKQGQLRSLHLTCDSAPVGSQ-GTWSTSCRINHLIFRGGAQITFLATFDVSPKAV: 870
SecStr : SEEETTB EEEEEEEEEE SS BSS EEEEEEETTEEE TT SS EEEEEEE SSS-SEEEEEEEE SS B TT EEEEEEEEEE SS :
ExpBur :eebbbeeeeebebebebebebeebbbbebebebeebbebeebeeeeeeeeebebebebeeeeeeee-eeebbebebbeeebeeeeebebbbbbebeeebe:
Contact : bb b b bbb b
queryA 888:WGDSVELHANVTCNNEDSDLLEDNSATTI---IPILYPINILIQDQEDSTLYVSFTPKGPK-IHQVKHMYQV-----RIQPSIHDHNIP---TLEAV---: 972
: ** * *** * * ** * * * * * * * * * *** * * * *** :
5es4_G_1 871:LGDRLLLTANVSSENNT----PRTSKTTFQLELPVKYAVYTVVSSHEQFTKYLNFSESEEKESHVAMHRYQVNNLGQRDLPVSINFWVPVELNQEAVWMD: 966
SecStr : SEEEEEEEEE TT ---- SSS EEEEEEEEEEE EEEEE S TT SS EEEEEEEEEEEE SSS EEEEEEEEEEETTEESEEE:
ExpBur :beeebebbbebbbbbee----eeeeeeeeeeeeebebbbebbbeebeeeeeebebeeeeeeeeeebebebbbbbebebebebbbbbbbbeebeeeebbee:
Contact : b
queryA 973:VGVPQPPSEGPITHQWSVQMEPPVPCHYEDLERLPDAAEPCLPGAL-FRCPV---VFRQEILVQVIGTLEL--VGEIEASSMFSLCSSLSISFNSSKHFH:1066
:* * * * * ** * * * *** * * * * * * * * * * * :
5es4_G_1 967:VEVSHP--QNPSLRCSSEKIAPPASDFLAHIQKNP-VLDCSIAGCLRFRCDVPSFSVQEELDFTLKGNLSFGWVRQILQKKV-SVVSVAEITFDTSVYSQ:1062
SecStr :EEEE S--SS EEEEEE HHHHHHSS -EE TTTSEEEEEEEEES TT EEEEEEEEEEE GGGGTTT S -EEEEEEEEE TTTEEE:
ExpBur :bebebe--eeeeeeeeeeeeeeeeeebeeebeeee-ebebebbbbbebebbbeebeeeeebbbbbebebbbebbeebeeeeb-bbbbbbebebeeeeeeb:
queryA 1067:LYGSNA:1072
:* * *:
5es4_G_1 1063:LPGQEA:1068
SecStr : SSTTG:
ExpBur :eeeeee:
Contact : b
|
[assembly_id:4]
[help]