[pdbjlvh2]Protein Model on 1ck4_B

Protein Model on 1ck4_B_1 (TEMPLATE: 1ck4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:2]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(ITAL_HUMAN)	B 1 (B)	polymer(polypeptide(L)) [195 aa]	INTEGRIN ALPHA-1 :ITA1_RAT

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:1ck4_B_1 identity=28.1%

queryA       155:VDLVFLFDGSMSLQPDEFQKILDFMKDVMKKLSN--TSYQFAAVQFSTSYKTEFDFSDYVKRKDPDALLKHV-KHMLLLTNTFGAINYVATEVFREELGA: 251
                : * *   *** *  *        *  *  *         *   **       **    *                  * * *   *     * * *  **:
1ck4_B_1       5:LDIVIVLDGSNSIYP--WESVIAFLNDLLKRMDIGPKQTQVGIVQYGENVTHEFNLNKYSSTEEVLVAANKIGRQGGLQTMTALGIDTARKEAFTEARGA: 102
SecStr          :EEEEEEEE  S    --HHHHHHHHHHHHTTS BSTTSBEEEEEEESSSEEEEE TTS SSHHHHHHHHTT      SS  HHHHHHHHHHTTT TTTT :    
ExpBur          :bbbbbbbbbbebbee--bebbbebbeebbeebebbeeebbbbbbbbbeeeebebbbeeeebbeebbebbeebeeebbeebbbbebbbbbbeebbeeeebb:    

queryA       252:RPDATKVLIIITDGEATDSGNIDAA------KDIIRYIIGIGKHFQ-----TKESQETLHKFASKPASE-FVKILDTFEKLKDLFTELQKKIYVIE: 335
                :*    **  * ****  *               * *  * *  *       *    *     ** *    *    *    *      *   *   *:
1ck4_B_1     103:RRGVKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSIAILGHYNRGNLSTEKFVEEIKSIASEPTEKHFFNVSDEL-ALVTIVKALGERIFALE: 197
SecStr          : TT EEEEEEEESS  TTGGGHHHHHHHHHHTT EEEEEEE HHHHHTT   HHHHHHHHHHS SSHHHHEEEESSGG-GGGGTHHHHHHHHHH -:    
ExpBur          :beebeebbbbbbbbebebeeebeebbeebeeeebebbbbbbbbebeeeeeebeebbebbeebbbeebeebbbebeebe-bbeebbeebbeebeee-:

Protein Model on 1ck4_B_1 (TEMPLATE: 1ck4 )

Input Residue Numbers for Focused Sites