[pdbjlvh2]Protein Model on 8dps_A_1_L

Protein Model on 8dps_A_1_L_1 (TEMPLATE: 8dps )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(IL6RA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [297 aa]	Interleukin-6 receptor subunit beta :IL6RB_HUMAN
2	b		L 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:8dps_A_1 identity=28.5%

queryA       106:VHLLVDVPPEEPQ-LSCFRKSPLSNVVCEW-GPRST---PSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCV----AS: 196
                :       *** *  ***          *** * * *      * *      **    *                **        *  * *   *      :
8dps_A_1      97:ITIISGLPPEKPKNLSCIVNEG-KKMRCEWDGGRETHLETNFTLKSEWATHKFADCKA----------KRDTPTSCTVDY----STVYFVNIEVWVEAEN: 181
SecStr          :EEEEEE      EEEEEEEETT-S  EEEEE  S  SS  EEEEEEE SSSB   EE ---------- SSSTTEEE SS----   TTS EEEEEEEEE:    
ExpBur          :bebebbeebeebeebebbbebe-eebebebeeeeebebebebbbebeeeeeeeeebeb----------eeeeeeebebeb----eeeeeeebbbbbbbeb:    

queryA       197:SVGSKFSKTQTFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNSSFYRLRFELRYRAERSKTFTTWMVKDL---QHHCVIHDAWSGLRHVVQLR: 293
                :  *   *    *       * ** *  *         *  **  *     *   *     **     *       *           *       *   *:
8dps_A_1     182:ALGKVTSDHINFDPVYKVKPNPPHNLSVINSEELSSILKLTWTNPSI--KSVIILKYNIQYRTKDASTWSQIPPEDTASTRSSFTVQDLKPFTEYVFRIR: 279
SecStr          :TTEEEE   EEE GGGGEE    EEEEEEE SSSTTEEEEEEE  GG--GGTS EEEEEEEEETT SS EE  GGGG S  SEEEEES  TT EEEEEEE:    
ExpBur          :eeeeeebeeeebbbbeebbbeebeebebeeeeeeeeebebebebbeb--eeebebebbbbbebeeeeeeeebeeeebeeeeeebebeebeeeeebbbebe:    

queryA       294:AQEEFGQGEWSEWSPEAMGTPW: 315
                :   * * * ** ** ** *   :
8dps_A_1     280:CMKEDGKGYWSDWSEEASGITY: 301
SecStr          :EEETTS S        EEEE  :    
ExpBur          :bbbeeeeeeebeebeebebebe:

Protein Model on 8dps_A_1_L_1 (TEMPLATE: 8dps )

Input Residue Numbers for Focused Sites