[pdbjlvh2]Protein Model on 5mj4_A

Protein Model on 5mj4_A_1 (TEMPLATE: 5mj4 )

CurrentView:HTML5 Change to:[JAVA]

DOWNLOAD:

[sequence-replaced 3D model] [for PyMOL]

[3D template]

[Modeller script]

ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

Window size :
[small] [medium] [large]

[help]

MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description
1	a	A(IL6RA_HUMAN)	A 1 (A)	polymer(polypeptide(L)) [289 aa]	Interleukin-12 subunit beta :IL12B_HUMAN

ALIGNMENTS

MODEL[1] Protein A "queryA" TEMPLATE:5mj4_A_1 identity=27.0%

queryA        39:PGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMGRRLLLRSVQLHDSGNYSCYRAGRPAG--------------TVHLLVD--VPPEEPQLSCF: 122
                :**  * ***    **      * *         *   * *  *        * * * *   *                      * *   *     * * :
5mj4_A_1      20:PGEMVVLTCDT--PEEDG-ITWTL------DQSSEVLGSGKTLTIQVKEFGDAGQYTCHKGGEVLSHSLLLLHKKEDGIWSTDILKDQKEPKNKTFLRCE: 110
SecStr          :  EEEEEE  S--S  SS-EEEEE------TT     EESSEEEEEE SGGG EEEEEEETTEEEEEEEEEEEEEETTEE   SS     SSSS   EEE:    
ExpBur          :eeeebebebee--eeeee-bebbb------eeeeeeebeebebebebeeeeebbebbbbeeeeeebebebbbbbeeeeeebeebbeeeeeeeeebbbbbe:    

queryA       123:RKSPLSNVVCEW----------------GPRSTPSLTTKAVLLVRKFQNSPAEDFQEPCQYSQESQKFSCQLAVPEGDSSFYIVSMCVASSVGSKFSKTQ: 206
                : *       * *                *       *  *  *                 ** * *  *   * *    *  *  *  *         * :
5mj4_A_1     111:AKNYSGRFTCWWLTTISTDLTFSVKSSRGSSDPQGVTCGAATLSAERXXXXXXEY----EYSVECQEDS---ACPAAEESLPIEVMVDAVHKLKYENYTS: 203
SecStr          :BSSSSSEEEEEEEES  SSEEEEEEEEE SSS EEEEE   EEEEE ------ E----EEEEEEEETT---  TTS   S EEEEEEEEETTEEEEEEE:    
ExpBur          :bebbebebebebbbeeeeebebebebbbbeeeeeebebeebeeeeee------ee----ebbbebebee---eeeeeebeebbebebbbbbeebbbebee:    

queryA       207:TFQGCGILQPDPPANITVTAVARNPRWLSVTWQDPHSWNS--SFYRLRFELRYRAERSKTFTTWMVKDLQHHCVIHDAWSGLRHVVQLRAQEEFGQGEWS: 304
                : *    *  **** *              * *  *  *    *   * *                  *     **             ***       **:
5mj4_A_1     204:SFFIRDIIKPDPPKNLQLKPL-KXXXXVEVSWEYPDTWSTPHSYFSLTFCVQVQXXXXXXXKDRVFTDKTSATVI----CRKNASISVRAQDRYYSSSWS: 298
SecStr          :EE HHHHB     EEEEEE  - ---- EEEEE  TTS S TTTS EEEEEEE ------- EEEEESSSEEE  ----  SSS EEEEEEESSS     :    
ExpBur          :ebebeebbebeebeebeeeee-e----ebbebebbeebbeeeeebbbbbbbbbe-------eeeeebeeeebebe----eeeebebbbebbbeeeebeeb:    

queryA       305:EWS: 307
                :** :
5mj4_A_1     299:EWA: 301
SecStr          :  E:    
ExpBur          :eeb:

Protein Model on 5mj4_A_1 (TEMPLATE: 5mj4 )

Input Residue Numbers for Focused Sites