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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | C 1 (C) | polymer(polypeptide(L)) [1060 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | D 1 (D) | polymer(polypeptide(L)) [121 aa] | VHH21 | 415T (identity: 100.0 %/93.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7xy4_C_1 identity=93.6% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7xy4_C_1 1:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 100 SecStr : B EEEEE S B SS SSEEEE EE SSEEEEEEEEB ------- B EE SS EEEEEEESS EEEESS STT: ExpBur :eeeebeeeeebeeeebebeebbbbebeeeeeeeeeeebeebbbbbebebbebbbbe-------eebbbbebebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7xy4_C_1 101:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 200 SecStr :S EEEE SS EEEEEEEEE SS SSS TT SEEEEEEEEEEEE S SSB EEEEEEEEEETTEEEEEEEEE BS: ExpBur :eebbbbbbebeebbbebbebebbeebbbbbeeeeeeeeeebeeeebeeeeeeeeeeeebeeeebebeeeeeebebbbbbbbbbeeeebebbbeeeeeebe: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7xy4_C_1 201:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 300 SecStr :SS BEEEEEETT EEEE ------- SEEEEEEE EE EEEEE SSS EEEEEETTSSHHHHHHHHHT S SEEE: ExpBur :eebeeeeebbeeeeebeeebebeebbbbbbbeee-------eeeeebbbbbbbbbebeeeebbbebeeebebeebbbbeeeebbebbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7xy4_C_1 301:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 400 SecStr :EEEEE EEE TTTTS S BTTS EE SS SHHHHSTT SEEEE SS GGGTTTS BSEEEEEEEEE GGGGGG STT: ExpBur :ebeebeeeeeeebbbbeeeeeebeeeebbeeeebebbebbeeeebeebbbebeebeeeeeeeeeebeeeebeebbeebbbebebbbbbbebebbeebeee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7xy4_C_1 401:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 500 SecStr : SSIIIII TT SEEEE HHHH SS TTSEEE SS TT B SS TT BTTBB EEE TT SSSS EEEEEE: ExpBur :eeeebbeebbebeeebebbbbbbebeeebeeeebbeebebbeeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebeeebebeeeeeebebbbbbbbb: Contact : b queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7xy4_C_1 501:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 600 SecStr :EEE SSS SB S SSEEEEE SS EEEEEEEE TT EE TTS EEB SSSS BEEEE EEEEEEE TTT EEEEE: ExpBur :bbebeeeebebbbbeeeeeebeeebbebebeeeeeebbbeebeeebeeeeeebeeeeeeebbbebeeeeebbbbeebeebbbbbbbbbbeebeebbbbee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7xy4_C_1 601:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 700 SecStr :T TT -------------------- EEE SSEEEES EE SS SEEEETTEEEEEE ------------ EEEEEE S SSEEE: ExpBur :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7xy4_C_1 701:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 800 SecStr :EE EE EEEEEEE EEE HHHHHSTT SHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHTTT SS SS TT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeebbeebbeebbebbeebbeebeeeeeeeeeeebeebebebbbbeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7xy4_C_1 801:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 900 SecStr : HHHHHHTTS -------------------------- SSEEE SS HHHHHHHHHHHHHHHHHT SSSSSSS HHHHHHHHHHTTT T: ExpBur :ebbebbeebbeebe--------------------------eeebbeeeeeebeeeebbeebbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7xy4_C_1 901:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1000 SecStr :HHHHTTHHHHHHHHHHHHHHHHHHHHH S TTHHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS TTTHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebeeeeeebeebeebeeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7xy4_C_1 1001:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1100 SecStr :HHHHHHHHHHHHHHHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EESSS EEEESSSEEEESSSSEEEE TTS E: ExpBur :ebeebeebbeebbebbeebbbbbbeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1145 :********************************: 7xy4_C_1 1101:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1132 SecStr :E BTTTEEE S TTTSTT EE B TTTTT : ExpBur :ebbeeebeeeeeeeeeeebeeeebeeeeeeee: |