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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1060 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | R 1 (A) | non-polymer(NAG) | 2-acetamido-2-deoxy-beta-D-glucopyranose | 1132I 1134N (identity: 100.0 %/93.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7xy4_A_1 identity=93.6% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :******************************************************** *************************************: 7xy4_A_1 1:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 100 SecStr : TT EEEEESS EE SSS S EE EEEE TTEEEEEE ------- EE SSEEEEEE SS EEEEEEESS SSS: ExpBur :eeeebebeeebeeeeeebeebbbbebeeeeeeeeeeebebebbbbeeebbebebee-------eebbeeebebeebbbbbbbbbebbbbbbbbbbeeeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7xy4_A_1 101:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 200 SecStr :S EEEE SS EEEEEEEE S EEB SS TT BS S EEEEEEEEE S SS EEEEEEEETTEEEEEEEE S: ExpBur :ebbbbbbbeeeeeebebbebebbebbbbbbeeeeeeeeeeebeeebeeeeeeeebeeeeeeeebeeeeeeeeeebbbbbbbbeeebebbbbbeeeeeeee: queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :********************************** ***********************************************************: 7xy4_A_1 201:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 300 SecStr :SSS S EEEEEEEEE EE EEEEB ------- SS B EEEEE EEEEEEEEE TTS EEEEEEGGGSHHHHHHHHHTSS SEEE: ExpBur :eeeeeeeebbeeeeebebeeebeebbbbbbbbee-------beeebbbebbbebbebeeeebbbbbeeeeebeebbbbeeeebbebebeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7xy4_A_1 301:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 400 SecStr :EEE EEEE B HHHHHS S BSSS EEE SBB TTTTTS TT SEEEESSS TTGGGT BSEEEEEEEEE SGGGGG STT: ExpBur :ebeeeeeeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeebeebebeebeeeebeeebbbebebbbbbbebebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7xy4_A_1 401:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 500 SecStr : SSSTTTT TT EEEEEEE HHHH TT TT EEE SS TT EE SSS TT BTTEE SEEE TTS TTSS EEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbbeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7xy4_A_1 501:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 600 SecStr :EEE SSS SB S SSEEEEEETTEE EEEEE TT EE TT EEE B SSS BEEEE S EEEEE TTT EEEEE: ExpBur :bbebeeeeeebbbeeeeeeebeeebbebbbbebeeebebeebeeebeeeebebeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbbeebeebbbbee: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :******* ************************************ *************************: 7xy4_A_1 601:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 700 SecStr :T S -------------------- EEEETTEEEES EE S SEE SSSEEEEEE ------------ EEEEEE SSEEE: ExpBur :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7xy4_A_1 701:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 800 SecStr :EEEEEEEEEEEEEEE EEEE HHHHH TT HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHTT SS SS STT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeebbeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeee: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :************** ************************************************************: 7xy4_A_1 801:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 900 SecStr :S HHHHHHHHS -------------------------- SSEEEE SS HHHHHHHHHHHHHHHHHT SSTTSSS HHHHHHHHHGGGT T: ExpBur :ebbebbebbbeebe--------------------------eeebbeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7xy4_A_1 901:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1000 SecStr :HHHHTTHHHHHHHHHHHHHHHHHHHHS STTHHHHHHHHHHHHHHHHHHTTTT TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebeeeeeebbebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7xy4_A_1 1001:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1100 SecStr :HHHHHHHHHHHHHHHHHHTTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EESSS EEEESSSEEEESSSSEEEE SSS E: ExpBur :ebeebeebbeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1145 :********************************: 7xy4_A_1 1101:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1132 SecStr :E TTTEEE S SSSSTT B SSTTT : ExpBur :ebbeebbeeeeebeeeeeeeeeebeeeeeeee: Contact : b b |