Protein Model on 7xy4_A_1_D_1 (TEMPLATE: 7xy4 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]

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MOLECULES contact sites
model mark query asym_id oper
(auth_asym_id)		 type description a(query A)
1 a A(SPIKE_SARS2) A 1 (A) polymer(polypeptide(L)) [1060 aa] Spike glycoprotein :SPIKE_SARS2
2 b D 1 (D) polymer(polypeptide(L)) [121 aa] VHH21 345T 346R 440N 441L 443S 444K 445V 448N 450N 498Q 499P 500T (identity: 100.0 %/93.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7xy4_A_1 identity=93.6%
queryA        14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113
                :********************************************************       *************************************:
7xy4_A_1       1:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHXXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 100
SecStr          :     TT      EEEEESS  EE SSS    S EE  EEEE  TTEEEEEE    -------       EE SSEEEEEE  SS  EEEEEEESS SSS:    
ExpBur          :eeeebebeeebeeeeeebeebbbbebeeeeeeeeeeebebebbbbeeebbebebee-------eebbeeebebeebbbbbbbbbebbbbbbbbbbeeeee:    

queryA       114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213
                :****************************************************************************************************:
7xy4_A_1     101:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 200
SecStr          :S   EEEE SS EEEEEEEE   S   EEB   SS  TT BS   S   EEEEEEEEE        S   SS    EEEEEEEETTEEEEEEEE     S:    
ExpBur          :ebbbbbbbeeeeeebebbebebbebbbbbbeeeeeeeeeeebeeebeeeeeeeebeeeeeeeebeeeeeeeeeebbbbbbbbeeebebbbbbeeeeeeee:    

queryA       214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313
                :**********************************       ***********************************************************:
7xy4_A_1     201:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSXXXXXXXSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 300
SecStr          :SSS  S  EEEEEEEEE      EE  EEEEB  -------  SS B    EEEEE EEEEEEEEE TTS EEEEEEGGGSHHHHHHHHHTSS   SEEE:    
ExpBur          :eeeeeeeebbeeeeebebeeebeebbbbbbbbee-------beeebbbebbbebbebeeeebbbbbeeeeebeebbbbeeeebbebebeeeeeebeebee:    

queryA       314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413
                :****************************************************************************************************:
7xy4_A_1     301:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 400
SecStr          :EEE        EEEE      B  HHHHHS S   BSSS   EEE SBB  TTTTTS TT SEEEESSS TTGGGT  BSEEEEEEEEE SGGGGG STT:    
ExpBur          :ebeeeeeeeeeebbbbeeeeeebebeebbeeeebbbbbebeeeebeebbbebeebeeeeebeebebeebeeeebeeebbbebebbbbbbebebbebbbee:    
Contact         :                               bb                                                                   

queryA       414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513
                :****************************************************************************************************:
7xy4_A_1     401:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 500
SecStr          :  SSSTTTT    TT  EEEEEEE HHHH  TT  TT EEE   SS   TT        EE SSS  TT  BTTEE SEEE    TTS TTSS EEEEEE:    
ExpBur          :eeeebbbebbebbeebebbbbbbebbeebbeeebbeebebbbeeeeebeeeeebeeeebeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbb:    
Contact         :                          bb bbb  b b                                               bbb             

queryA       514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613
                :****************************************************************************************************:
7xy4_A_1     501:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 600
SecStr          :EEE SSS  SB  S        SSEEEEEETTEE  EEEEE      TT   EE TT  EEE B SSS  BEEEE    S EEEEE  TTT    EEEEE:    
ExpBur          :bbebeeeeeebbbeeeeeeebeeebbebbbbebeeebebeebeeebeeeebebeeeeeeeebbbbbeeeebbebeebeeebbbbbbbbbeebeebbbbee:    

queryA       614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713
                :*******                    ************************************            *************************:
7xy4_A_1     601:DVNCTEVXXXXXXXXXXXXXXXXXXXXNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 700
SecStr          :T  S   -------------------- EEEETTEEEES EE S     SEE SSSEEEEEE ------------  EEEEEE            SSEEE:    
ExpBur          :ebeeeee--------------------eeeebebbbbeebeebeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee:    

queryA       714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813
                :****************************************************************************************************:
7xy4_A_1     701:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 800
SecStr          :EEEEEEEEEEEEEEE    EEEE HHHHH TT HHHHHHHHTT SHHHHHHHHHHHHHHHHHHHHHHHHTT SS     SS  STT   TTTS  TTSSS:    
ExpBur          :bbeebebebeeebbbbbbebbebebeebbbeebeebeebbeeeeeebeebeebbeebbeebbebbeebbeebeeebeeeeeeebeebebeebbeeeeeee:    

queryA       814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913
                :**************                          ************************************************************:
7xy4_A_1     801:KRSFIEDLLFNKVTXXXXXXXXXXXXXXXXXXXXXXXXXXKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 900
SecStr          :S  HHHHHHHHS  --------------------------  SSEEEE  SS HHHHHHHHHHHHHHHHHT SSTTSSS     HHHHHHHHHGGGT  T:    
ExpBur          :ebbebbebbbeebe--------------------------eeebbeeeeeebeeeebbeebebbbbbbbebbebbeeeeeeeeebbebbbebbeebebee:    

queryA       914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013
                :****************************************************************************************************:
7xy4_A_1     901:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1000
SecStr          :HHHHTTHHHHHHHHHHHHHHHHHHHHS  STTHHHHHHHHHHHHHHHHHHTTTT  TTSS SSHHHHHTTS HHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :ebbeeeeeebbeebeebbeebeeebeeeeeebbebeebeeebeebeeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebee:    

queryA      1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113
                :****************************************************************************************************:
7xy4_A_1    1001:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1100
SecStr          :HHHHHHHHHHHHHHHHHHTTSS   STTTSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEE S EESSS EEEESSSEEEESSSSEEEE SSS   E:    
ExpBur          :ebeebeebbeebbebbeebbbeebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbeeeebbbbbeeeebbbbbebbeeee:    

queryA      1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1145
                :********************************:
7xy4_A_1    1101:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPEL:1132
SecStr          :E  TTTEEE S SSSSTT B      SSTTT :    
ExpBur          :ebbeebbeeeeebeeeeeeeeeebeeeeeeee:

Input Residue Numbers for Focused Sites

ex) 2,15,123