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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1103 aa] | Spike glycoprotein :SPIKE_SARS2 | |
2 | b | H 1 (H) | branched(oligosaccharide) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | 122N 124T 125N 127V 171V (identity: 100.0 %/97.6 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7wgv_A_1 identity=97.6% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :********************************************************* *************************************: 7wgv_A_1 1:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVXXXXXXKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 100 SecStr : EEEEE S EE SS SEEEEEEEEE TTEEEEEEEEB ------ B EE SS EEEEEEESS EEEEESS SSS: ExpBur :ebeebeeeeeeeeeebebeebbbbbeeeeeebeeeeebeebbbbbeeebbbbbbeee------bbbbbeebebeebbbbbbbbbbbbbbbbbbbeebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7wgv_A_1 101:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 200 SecStr :S EEEEEE SS EEEEEEEEEE SS EEEEEETTTTEEEEEEE SEEEEES B S SS EEEEEEEEEETTEEEEEEEEEE S: ExpBur :eebbbbbeebebebbbbbebebeebbbbbbebeeeeeeeeeebeebeeeeeeeeeeeeeeeeeeebeeeeeebeebebbbbbeeeeebbbbeeeeebeee: Contact : b bb b b queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 7wgv_A_1 201:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 300 SecStr :SS EEEEEEEEE EEEEE EEEE TTS SSSSSEE EEEEEEE EEEEEEEEE SSS EEEEEETTSSHHHHHHHHHTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbbeeeeeeebebbbbbebbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeeeebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7wgv_A_1 301:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 400 SecStr :EE B B STTTSS S STT EEEEE S B GGGSS SEEEEESS GGGTTS EES EEEEEEEEEGGGGGGSSSS: ExpBur :ebeebeeeeeeebbbbeeeeeebeeeebbeeeebebbeebeeeebeebebeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbbee: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7wgv_A_1 401:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 500 SecStr : SHHHHHT SS EEEEEEE HHHH TT EEE SS TT EE SSS SS BTTEE SEEE TTS STTSEEEEEEE: ExpBur :eeeebbbebbebbeebebbbbbbebeeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeebebbbbbbbe: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7wgv_A_1 501:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 600 SecStr :E BSSS EE S SSEEEEEETTEEEEEEEEE TT EEE TTS EEEEE SSS EEEEE S EEEEE TTT EEEES: ExpBur :bbebeeeebebbbeeeeeebbeeebbebbbbbeeeebbbeebeeebeeeebbbeeeeeebebbbbbeeeebbebeebeebbbbbbbbbeeebeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ********************************************* *************************: 7wgv_A_1 601:DVNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXX----XXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 696 SecStr :S ------------- S S S EEE SS EEES EE S S SEEEETTEEEEEE ------------ EEEEEE S SSEEE: ExpBur :eeebe-------------eeebeeeeeeebebebbbbbebeeeeeeeeeebebeeebbbbbee------------eeebbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7wgv_A_1 697:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 796 SecStr :EE EEEEEEEEEEE EEEE HHHHHH S SHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHH S S SS SSS TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbeebbebbeebbeebeeeeeebeeeebeebebebbbeeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 7wgv_A_1 797:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 896 SecStr : HHHHHHHHHS SS S HHHHTTTSSS HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHSTTGGGSSS HHHHHHHHHHHTT T: ExpBur :ebbebbebbbeebeeeeeeeeeeeeebeeeeeeeeebbebeeebbeeeeeebeeeebbeebbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7wgv_A_1 897:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI: 996 SecStr :HHHHHSHHHHHHHHHHHHHHHHHHHHH S HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS TTTSHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebeeeeeebeebeebbeebeebbeebbeebeeeeebebeebeebeeeeeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7wgv_A_1 997:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1096 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTSSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEE S EESSSEEEEESSSEEEESSSSEEEE SSS B: ExpBur :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbebbbbbbbbbeeeeeeebebbebbbeeeebbebeebebbbeeeebebbbebbeeee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1147 :**********************************: 7wgv_A_1 1097:IITTDNTFVSGNCDVVIGIVNNTVYDPLQPELDS:1130 SecStr : BTTTEEEEEESSSSTT EE B SSHHHHH : ExpBur :ebbeeebeeeeebeeeeeeeeeebeeeeeeeeee: |