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DOWNLOAD: [sequence-replaced 3D model] [for PyMOL] [3D template] [Modeller script]
ALL MOLECULES IN THE BIOLOGICAL UNIT: |
MOLECULES | contact sites | |||||
model | mark | query | asym_id oper (auth_asym_id) |
type | description | a(query A) |
1 | a | A(SPIKE_SARS2) | A 1 (A) | polymer(polypeptide(L)) [1101 aa] | Spike glycoprotein,Fibritin :SPIKE_SARS2:WAC_BPT4 | |
2 | b | G 1 (G) | branched(oligosaccharide) | alpha-L-fucopyranose-(1-3)-[2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)][alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | 164N 165N (identity: 100.0 %/97.8 %) |
ALIGNMENTS |
MODEL[1] Protein A "queryA" TEMPLATE:7qur_A_1 identity=97.8% |
queryA 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 :****************************************************************************************************: 7qur_A_1 14:QCVNLTTRTQLPPAYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSK: 113 SecStr : EEEEE S B SSS SEEEEEEEEE TTEEEEEEEEEEE SSS EEEE EEE SS EEEEEEESS EEEEEEESSTTTT: ExpBur :eebebeeeeeeeeeebebbbbbbbbbeeeeeeeeeeebeebbbbbeeebbbbebeeeeeeeeebbbbbeebebeebbbbbbbbbbebbbbbbbbbebeee: queryA 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 :****************************************************************************************************: 7qur_A_1 114:TQSLLIVNNATNVVIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLV: 213 SecStr :S EEEEEE SS EEEEEEEEEEEEEEEEEEEEETTTTEEEEEEEEEEEEEEEEEEEEE SSB EEEEEEEEEETTEEEEEEEEE BS: ExpBur :eebbbbbbebebebbbbbebebbebbbbbbebeeeeeeeeeebeebeeeeeeeeeeeebeeeebebebeeeebeebebbbbbeeeeebebbbeebeeeee: Contact : bb queryA 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 :****************************************************************************************************: 7qur_A_1 214:RDLPQGFSALEPLVDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIY: 313 SecStr :SS S BEEEEEE EEEEEEEEEESSSS SSSSSS B SEEEEEEE EEEEEEEEE TTS EEEEEETTT HHHHHHHHHTSS SEEE: ExpBur :eebbeeebbbeeeeebebebebeebbbbbbbbbbeeeeeeebebbebbbbbbbbbebeeeebbbebeeebebeebbbbeeebbbbbbbeeeebebeebee: queryA 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 :****************************************************************************************************: 7qur_A_1 314:QTSNFRVQPTESIVRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPG: 413 SecStr :EE EEEEE SB HHHHHT SS BSTT EEEEE SEE GGGGGTT SEEEESSS GGGGGG EESSEEEEEEEEESTTGGG STT: ExpBur :ebeebeeeeeeebbbbeeeeeebebeebbeeeebebbbebeeeebeebbbeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbeebbebbbbe: queryA 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 :****************************************************************************************************: 7qur_A_1 414:QTGKIADYNYKLPDDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVL: 513 SecStr : SHHHHHT TT EEEEEEE HHHH TT EEE S SS TT EE SSS SS BTTEE SEEE TTS GGGSEEEEEEE: ExpBur :eeebbbbebbbbbeebebbbbbbebbeebbeeebbeebebbeebeeebeeeeebeeeeeeeeeeeebeeeeeeebeebbeebbbeeebeebebbbbbbbe: queryA 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 :****************************************************************************************************: 7qur_A_1 514:SFELLHAPATVCGPKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQ: 613 SecStr :E BSSS EE S SSEEEEEETTEEEEEEEEE TT EEE TT EEEEE TTT EEEEE S EEEEES TTT S EEEET: ExpBur :bbebeeeebebbbeeeeeeebeeebbebbbbbbeeebebeebeeebeeeebbbeeeeeebebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbe: queryA 614:DVNCTEVPVAIHADQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIA: 713 :***** ********************************************* *************************: 7qur_A_1 614:DVNCTXXXXXXXXXXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTXXXXXXXXXXXXSQSIIAYTMSLGAENSVAYSNNSIA: 713 SecStr :T ------------- S S S B BTTBEEES EE S SEEEETTEEEEEE ------------ EEEEEE TTEEE: ExpBur :ebebe-------------eeebeeeeeeeeebeebbbbebeeeeeeeeeebebeeebbbbbee------------eebbbbbeeeeeeeeeeeeeeeeee: queryA 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 :****************************************************************************************************: 7qur_A_1 714:IPTNFTISVTTEILPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPS: 813 SecStr :EES EEEEEEEEEEE EEEE HHHHHHTT HHHHHHHTTT HHHHHHHHHHHHHHHHHHHHHHHHH S S SS STT TTTS TTSSS: ExpBur :bbeebebebeeebbbbbbbbbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbbebbeebbbebeeeeeeeeeeebeebebeebbbeeeeeb: queryA 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 :****************************************************************************************************: 7qur_A_1 814:KRSFIEDLLFNKVTLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQ: 913 SecStr : HHHHHHHHTS SSSSS HHHHSSTHHHH HHHHHHHTTEEEE SS HHHHHHHHHHHHHHHHHHTTGGGGSS HHHHHHHHHHHTT H: ExpBur :ebbebbbbbeebbeeeeeeeebeeeebeeeebeeeebbebeeebbeeeeeebeeeebbebbbbbbbbbbebbebbeeeeeeeeebbebbbebbeebebee: queryA 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 :****************************************************************************************************: 7qur_A_1 914:NVLYENQKLIANQFNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLI:1013 SecStr :HHHHHTHHHHHHHHHHHHHHHHHHHHSS HHHHHHHHHHHHHHHHHHHGGG TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHH: ExpBur :ebbeeeeeebbeebeebbeebeeebeeeeeebeebbebbeebeebbbebbeebeeeeebebbebeebeeebeeeebeebbeebbebbbebbeebbeebee: queryA 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 :****************************************************************************************************: 7qur_A_1 1014:RAAEIRASANLAATKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQ:1113 SecStr :HHHHHHHHHHHHHHHHHHHTSS STTTSSSSEEEEEEEEEETTEEEEEEEEEEE EEEEEEES EESSSSEEE SSSEEEESSS EEEE SSS E: ExpBur :bbeebeebbeebbebbeebbbbebeeeebbbeeebbbbbbbbbbbbbbbbbbbbbeeeeeebebbebbbeeeebbebeebbbbbeeeebebbbebbebee: queryA 1114:IITTDNTFVSGNCDVVIGIVNNTVYD:1139 :**************************: 7qur_A_1 1114:IITTDNTFVSGNCDVVIGIVNNTVYD:1139 SecStr :E SSS EE S SSSSTT EE : ExpBur :ebeeebbeeeeebeeeeeeeebeeee: |