[pdbjlvh2]Protein Model on 7od3_A_1_N

Protein Model on 7od3_A_1_N_1 (TEMPLATE: 7od3 )

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ALL MOLECULES IN THE BIOLOGICAL UNIT:
[assembly_id:1]
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MOLECULES						contact sites
model	mark	query	asym_id oper (auth_asym_id)	type	description	a(query A)
1	a	A(SPIKE_SARS2)	A 1 (A)	polymer(polypeptide(L)) [1012 aa]	Spike glycoprotein :SPIKE_SARS2
2	b		N 1 (A)	non-polymer(NAG)	2-acetamido-2-deoxy-beta-D-glucopyranose	1134N (identity: 100.0 %/91.6 %)
ALIGNMENTS
MODEL[1] Protein A "queryA" TEMPLATE:7od3_A_1 identity=91.6%
queryA        27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAIHVSGTNGTKRFDNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNATNV: 126
                :*****************************************             ******************************************  **:
7od3_A_1      27:AYTNSFTRGVYYPDKVFRSSVLHSTQDLFLPFFSNVTWFHAXXXXXXXXXXXXXNPVLPFNDGVYFASTEKSNIIRGWIFGTTLDSKTQSLLIVNNXXNV: 126
SecStr          : EEE SS   B SSS    S EEEEEEEE  SS EEEEEE -------------  EEE SS EEEEEE SS  EEEEEEESS STTS EEEEEE -- E:    
ExpBur          :eeeebeebbbbbeeeeeeeeeeeebeebbbbbeeebeebee-------------eeebebeebbbbbbebeeeebebbbbbeebeeeeebbbbbee--ee:    

queryA       127:VIKVCEFQFCNDPFLGVYYHKNNKSWMESEFRVYSSANNCTFEYVSQPFLMDLEGKQGNFKNLREFVFKNIDGYFKIYSKHTPINLVRDLPQGFSALEPL: 226
                :***************               ****************               ***********************    ************:
7od3_A_1     127:VIKVCEFQFCNDPFLXXXXXXXXXXXXXXXFRVYSSANNCTFEYVSXXXXXXXXXXXXXXXNLREFVFKNIDGYFKIYSKHTPIXXXXDLPQGFSALEPL: 226
SecStr          :EEEEE EEEEEEEE --------------- EEEEEE   SEEE  --------------- EEEEEEEEETTEEEEEEEEE  ----        BEEE:    
ExpBur          :bbbbbebebeeebee---------------eebeeeeeeeeeeeee---------------ebebbbbbeeeeebebbbeeeee----ebeeeeebbeee:    

queryA       227:VDLPIGINITRFQTLLALHRSYLTPGDSSSGWTAGAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
                :*****************                  *****************************************************************:
7od3_A_1     227:VDLPIGINITRFQTLLAXXXXXXXXXXXXXXXXXXAAAYYVGYLQPRTFLLKYNENGTITDAVDCALDPLSETKCTLKSFTVEKGIYQTSNFRVQPTESI: 326
SecStr          :EEEE      EEEEEE ------------------  EEEEEE EEEEEEEEE TTS EEEEEETTS HHHHHHHHHTSS   SEEEE          B :    
ExpBur          :eebebebebeebbbbbe------------------ebbbbbbebeebebbbebeeebebeebbbbeeebbbbbbbeeeeeebeebeeebeebeeeeeeeb:    

queryA       327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
                :****************************************************************************************************:
7od3_A_1     327:VRFPNITNLCPFGEVFNATRFASVYAWNRKRISNCVADYSVLYNSASFSTFKCYGVSPTKLNDLCFTNVYADSFVIRGDEVRQIAPGQTGKIADYNYKLP: 426
SecStr          : B     SB  HHHHHS SS   STT EEEEE SBB  GGGGTTT   SEEEESSS GGGGGG  BSSEEEEEEEEEGGGGGG STT  SHHHHHT    :    
ExpBur          :bbbeeeeeebebeebbeeeebbbbeebeeeebeebbeeeeebeeeeeeeeeebeebeeeebeebbbbebebbbbbbbbebbebbeeeeeeebbbebbebb:    

queryA       427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
                :****************************************************************************************************:
7od3_A_1     427:DDFTGCVIAWNSNNLDSKVGGNYNYLYRLFRKSNLKPFERDISTEIYQAGSTPCNGVEGFNCYFPLQSYGFQPTNGVGYQPYRVVVLSFELLHAPATVCG: 526
SecStr          :TT  EEEEEEE TTTS  TT B   EEE   SS   TT        EE SSS  SS  SSSEE SEEE  B TTS GGGSEEEEEEEE  BSSS  SB  :    
ExpBur          :eebebbbbbbebbeebbeeebbeebebbeebeeebeeeeeeeeeeeeeeeeeebeeeeeeebeebbeebebeeeeeeeebbbbbbbebbebeeeebebbb:    

queryA       527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTEVPVAIHA: 626
                :********************************************************************************************        :
7od3_A_1     527:PKKSTNLVKNKCVNFNFNGLTGTGVLTESNKKFLPFQQFGRDIADTTDAVRDPQTLEILDITPCSFGGVSVITPGTNTSNQVAVLYQDVNCTXXXXXXXX: 626
SecStr          :S        SSEEEEEETTEEEEEEEEE      TT  EEE TTS EEEEE TTT  EEEEE S    EEEEES TTT S  EEEETT    --------:    
ExpBur          :eeeeeeebeeebbebbbbbeeeebbbeeeeeebeeeebbeeeeeeeeebbbbbeeeebbebeebeebbbbbbbbbbeebeeebbbbeebebe--------:    

queryA       627:DQLTPTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQTQTNSPRRARSVASQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 726
                :     ********************************************             **************************************:
7od3_A_1     627:XXXXXTWRVYSTGSNVFQTRAGCLIGAEHVNNSYECDIPIGAGICASYQ--------XXXXXSQSIIAYTMSLGAENSVAYSNNSIAIPTNFTISVTTEI: 718
SecStr          :-----   SS   S EEEETTEEEES EE SS    SEEEETTEEEEE -------------   EEEEE            TTEEEEEEEEEEEEEEEE:    
ExpBur          :-----eeebeeeeeeebebeebbbbebeeeeeeeeeebebeeebbbeee-------------eeebbbbeeeeeeeeeeeeeeeeeebbeebebebeeeb:    

queryA       727:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 826
                :****************************************************************************************************:
7od3_A_1     719:LPVSMTKTSVDCTMYICGDSTECSNLLLQYGSFCTQLNRALTGIAVEQDKNTQEVFAQVKQIYKTPPIKDFGGFNFSQILPDPSKPSKRSFIEDLLFNKV: 818
SecStr          :EE    EEEE HHHHHTTT HHHHHHGGGGGGGHHHHHHHHHHHHHHHHHHHHHHH    S     SS  BTTB  TTTS  SSSSS   HHHHHHHTTS:    
ExpBur          :bbbbbebbebebeebbbeebeebeebbeeeeeebeebeeebeebbebbeebbeebbbebeeeeeebeeeebeebebebbbeeeeeebebbebbeebbeeb:    

queryA       827:TLADAGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 926
                :**   ***********************************************************************************************:
7od3_A_1     819:TLXXXGFIKQYGDCLGDIAARDLICAQKFNGLTVLPPLLTDEMIAQYTSALLAGTITSGWTFGAGAALQIPFAMQMAYRFNGIGVTQNVLYENQKLIANQ: 918
SecStr          :  ---     TTTT SGGGGT SSHHHHTTTEEEE  SS HHHHHHHHHHHHHHHHHHTTSGGGSS     HHHHHHHHHHHTT  HHHHHTTHHHHHHH:    
ExpBur          :ee---eeeeeeeebeeeebeeeeebebeeebbeeeeeebeeeebbebbbbbbbbbbebbeebeeeeeeeeebbebbbebbeebebeeebbeeeeeebbee:    

queryA       927:FNSAIGKIQDSLSSTASALGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1026
                :*************     **********************************************************************************:
7od3_A_1     919:FNSAIGKIQDSLSXXXXXLGKLQDVVNQNAQALNTLVKQLSSNFGAISSVLNDILSRLDKVEAEVQIDRLITGRLQSLQTYVTQQLIRAAEIRASANLAA:1018
SecStr          :HHHHHHHHHHH  ----- HHHHHHHHHHHHHHHHHHHGGG  TTSS S HHHHHHHS HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH:    
ExpBur          :beebbbebeeeee-----eeebbebbeebeebbeebeeebeeeeebebbebeebeeeeeeeebeebbeebbebbbebbeebbeebeeebeebeeebeebb:    

queryA      1027:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1126
                :****************************************************************************************************:
7od3_A_1    1019:TKMSECVLGQSKRVDFCGKGYHLMSFPQSAPHGVVFLHVTYVPAQEKNFTTAPAICHDGKAHFPREGVFVSNGTHWFVTQRNFYEPQIITTDNTFVSGNC:1118
SecStr          :HHHHHHTSS   STTSSSSSEEEEEEEEEETTEEEEEEEEEEEEEEEEEEEES EESSS EEE SSSEEEESSS EEEEETTEEEEEE BSSS EE   S:    
ExpBur          :ebbeebbbbbbeeeebbeeeebbbbbbbbbbebbbbbbbbbeeeeeeebeebebbbeeeebbebeebbbbbeeeebebbbeebbeeeebbeebbeeeeee:    

queryA      1127:DVVIGIVNNTVYD:1139
                :*************:
7od3_A_1    1119:DVVIGIVNNTVYD:1131
SecStr          :SS TT EE   B :    
ExpBur          :eeeeeeeeeebee:    
Contact         :       b
Protein Model on 7od3_A_1_N_1 (TEMPLATE: 7od3 )

Input Residue Numbers for Focused Sites
